AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
    • AAI clade 29-1 medoid: 3300027835 270
    • AAI clade 29-2 medoid: 3300027835 197
      • AAI clade 29-2-1 medoid: 3300013137 169
      • AAI clade 29-2-2 medoid: 3300002242 80
      • AAI clade 29-2-3 medoid: 3300024353 69
        • AAI clade 29-2-3-1 medoid: 3300024353 69
          • AAI clade 29-2-3-1-1 medoid: 3300024353 69
            • AAI clade 29-2-3-1-1-1 medoid: 3300024353 69
              • AAI clade 29-2-3-1-1-1-1 medoid: 3300024353 69
              • AAI clade 29-2-3-1-1-1-2 medoid: 3300013137 281
                1 dataset: 3300013137 281 (AAI: 100.0%)
              • AAI clade 29-2-3-1-1-1-3 medoid: 3300024341 29
              • AAI clade 29-2-3-1-1-1-4 medoid: 3300027888 96
              • AAI clade 29-2-3-1-1-1-5 medoid: 3300027893 138
              • AAI clade 29-2-3-1-1-1-6 medoid: wastewater GEMS 3300025631 66
              • AAI clade 29-2-3-1-1-1-7 medoid: wastewater GEMS 3300025631 68
            • AAI clade 29-2-3-1-1-2 medoid: 3300017526 58
          • AAI clade 29-2-3-1-2 medoid: 3300026253 48
          • AAI clade 29-2-3-1-3 medoid: wastewater GEMS 3300025871 88
        • AAI clade 29-2-3-2 medoid: 3300013132 169
        • AAI clade 29-2-3-3 medoid: 3300013137 217
        • AAI clade 29-2-3-4 medoid: 3300014656 54
        • AAI clade 29-2-3-5 medoid: 3300027835 196
        • AAI clade 29-2-3-6 medoid: 3300027815 101
        • AAI clade 29-2-3-7 medoid: 3300027835 142
        • AAI clade 29-2-3-8 medoid: 3300027835 194
        • AAI clade 29-2-3-9 medoid: wastewater GEMS 3300028625 42
      • AAI clade 29-2-4 medoid: 3300027762 20
      • AAI clade 29-2-5 medoid: wastewater GEMS 3300013232 34
      • AAI clade 29-2-6 medoid: 3300027835 197
      • AAI clade 29-2-7 medoid: 3300017998 31
      • AAI clade 29-2-8 medoid: wastewater GEMS 3300025393 34
      • AAI clade 29-2-9 medoid: 3300027819 166
      • AAI clade 29-2-10 medoid: wastewater singleton GCA 016699385 1 ASM1669938v1 genomic
    • AAI clade 29-3 medoid: 3300020447 25
    • AAI clade 29-4 medoid: 3300025648 37
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566