AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 29-1
medoid: 3300027835 270
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AAI clade 29-1-1
medoid: 3300017434 34
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AAI clade 29-1-2
medoid: 3300000234 48
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AAI clade 29-1-3
medoid: 3300000234 64
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AAI clade 29-1-4
medoid: 3300013126 161
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AAI clade 29-1-5
medoid: 3300009702 168
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AAI clade 29-1-6
medoid: 3300009702 185
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AAI clade 29-1-7
medoid: 3300009703 108
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AAI clade 29-1-8
medoid: 3300013123 145
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AAI clade 29-1-9
medoid: wastewater GEMS 3300025858 89
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AAI clade 29-1-10
medoid: 3300013125 139
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AAI clade 29-1-11
medoid: wastewater GEMS 3300025867 89
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AAI clade 29-1-12
medoid: 3300027835 270
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AAI clade 29-1-13
medoid: 3300013137 205
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AAI clade 29-1-14
medoid: 3300014208 128
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AAI clade 29-1-15
medoid: 3300015360 147
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AAI clade 29-1-16
medoid: 3300017988 45
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AAI clade 29-1-17
medoid: wastewater ye ASMAG321
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AAI clade 29-1-18
medoid: 3300020262 32
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AAI clade 29-1-19
medoid: 3300020364 55
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AAI clade 29-1-20
medoid: 3300020425 42
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AAI clade 29-1-21
medoid: 3300020447 32
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AAI clade 29-1-22
medoid: 3300020724 8
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AAI clade 29-1-23
medoid: 3300024333 28
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AAI clade 29-1-24
medoid: 3300024353 80
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AAI clade 29-1-25
medoid: 3300025428 10
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AAI clade 29-1-26
medoid: 3300026267 31
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AAI clade 29-1-27
medoid: 3300027815 85
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AAI clade 29-1-28
medoid: 3300027819 145
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AAI clade 29-1-29
medoid: 3300027819 182
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AAI clade 29-1-30
medoid: 3300027835 193
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AAI clade 29-1-31
medoid: wastewater ye ASMAG1334
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AAI clade 29-1-32
medoid: 3300027970 75
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AAI clade 29-1-33
medoid: 3300027976 102
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AAI clade 29-1-34
medoid: 3300028581 62
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AAI clade 29-1-35
medoid: 3300028581 77
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AAI clade 29-1-36
medoid: wastewater GEMS 3300006056 179
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AAI clade 29-1-37
medoid: wastewater GEMS 3300014059 13
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AAI clade 29-1-38
medoid: wastewater GEMS 3300014059 20
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AAI clade 29-1-39
medoid: wastewater GEMS 3300025677 102
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AAI clade 29-1-40
medoid: wastewater GEMS 3300025724 83
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AAI clade 29-1-41
medoid: wastewater GEMS 3300025737 120
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AAI clade 29-1-42
medoid: wastewater GEMS 3300025855 71
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AAI clade 29-1-43
medoid: wastewater GEMS 3300025866 73
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AAI clade 29-1-44
medoid: wastewater singleton GCA 016699085 1 ASM1669908v1 genomic
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AAI clade 29-1-45
medoid: wastewater ye ASMAG95
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AAI clade 29-1-46
medoid: wastewater singleton GCA 016699465 1 ASM1669946v1 genomic
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AAI clade 29-1-47
medoid: wastewater ye ASMAG1010
1 dataset: wastewater ye ASMAG1010 (AAI: 100.0%)
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AAI clade 29-1-48
medoid: wastewater ye ASMAG103
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AAI clade 29-1-49
medoid: wastewater ye ASMAG522
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AAI clade 29-1-50
medoid: wastewater ye ASMAG138
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AAI clade 29-1-51
medoid: wastewater ye ASMAG1576
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AAI clade 29-1-52
medoid: wastewater ye ASMAG1769
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AAI clade 29-1-53
medoid: wastewater ye ASMAG232
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AAI clade 29-1-54
medoid: wastewater ye ASMAG35
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AAI clade 29-1-55
medoid: wastewater ye ASMAG510
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AAI clade 29-1-56
medoid: wastewater ye ASMAG509
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AAI clade 29-1-57
medoid: wastewater ye ASMAG63
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AAI clade 29-1-58
medoid: wastewater ye ASMAG73
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AAI clade 29-1-59
medoid: wastewater ye ASMAG910
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AAI clade 29-1-60
medoid: wastewater ye ASMAG973
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AAI clade 29-1-1
medoid: 3300017434 34
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AAI clade 29-2
medoid: 3300027835 197
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AAI clade 29-3
medoid: 3300020447 25
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AAI clade 29-4
medoid: 3300025648 37
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AAI clade 29-1
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566