AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
    • AAI clade 29-1 medoid: 3300027835 270
      • AAI clade 29-1-1 medoid: 3300017434 34
      • AAI clade 29-1-2 medoid: 3300000234 48
      • AAI clade 29-1-3 medoid: 3300000234 64
      • AAI clade 29-1-4 medoid: 3300013126 161
      • AAI clade 29-1-5 medoid: 3300009702 168
      • AAI clade 29-1-6 medoid: 3300009702 185
      • AAI clade 29-1-7 medoid: 3300009703 108
      • AAI clade 29-1-8 medoid: 3300013123 145
      • AAI clade 29-1-9 medoid: wastewater GEMS 3300025858 89
      • AAI clade 29-1-10 medoid: 3300013125 139
      • AAI clade 29-1-11 medoid: wastewater GEMS 3300025867 89
      • AAI clade 29-1-12 medoid: 3300027835 270
      • AAI clade 29-1-13 medoid: 3300013137 205
      • AAI clade 29-1-14 medoid: 3300014208 128
      • AAI clade 29-1-15 medoid: 3300015360 147
      • AAI clade 29-1-16 medoid: 3300017988 45
      • AAI clade 29-1-17 medoid: wastewater ye ASMAG321
      • AAI clade 29-1-18 medoid: 3300020262 32
      • AAI clade 29-1-19 medoid: 3300020364 55
      • AAI clade 29-1-20 medoid: 3300020425 42
      • AAI clade 29-1-21 medoid: 3300020447 32
      • AAI clade 29-1-22 medoid: 3300020724 8
      • AAI clade 29-1-23 medoid: 3300024333 28
      • AAI clade 29-1-24 medoid: 3300024353 80
      • AAI clade 29-1-25 medoid: 3300025428 10
      • AAI clade 29-1-26 medoid: 3300026267 31
      • AAI clade 29-1-27 medoid: 3300027815 85
      • AAI clade 29-1-28 medoid: 3300027819 145
      • AAI clade 29-1-29 medoid: 3300027819 182
      • AAI clade 29-1-30 medoid: 3300027835 193
      • AAI clade 29-1-31 medoid: wastewater ye ASMAG1334
      • AAI clade 29-1-32 medoid: 3300027970 75
      • AAI clade 29-1-33 medoid: 3300027976 102
      • AAI clade 29-1-34 medoid: 3300028581 62
      • AAI clade 29-1-35 medoid: 3300028581 77
      • AAI clade 29-1-36 medoid: wastewater GEMS 3300006056 179
      • AAI clade 29-1-37 medoid: wastewater GEMS 3300014059 13
      • AAI clade 29-1-38 medoid: wastewater GEMS 3300014059 20
      • AAI clade 29-1-39 medoid: wastewater GEMS 3300025677 102
      • AAI clade 29-1-40 medoid: wastewater GEMS 3300025724 83
      • AAI clade 29-1-41 medoid: wastewater GEMS 3300025737 120
      • AAI clade 29-1-42 medoid: wastewater GEMS 3300025855 71
      • AAI clade 29-1-43 medoid: wastewater GEMS 3300025866 73
      • AAI clade 29-1-44 medoid: wastewater singleton GCA 016699085 1 ASM1669908v1 genomic
      • AAI clade 29-1-45 medoid: wastewater ye ASMAG95
      • AAI clade 29-1-46 medoid: wastewater singleton GCA 016699465 1 ASM1669946v1 genomic
      • AAI clade 29-1-47 medoid: wastewater ye ASMAG1010
        1 dataset: wastewater ye ASMAG1010 (AAI: 100.0%)
      • AAI clade 29-1-48 medoid: wastewater ye ASMAG103
      • AAI clade 29-1-49 medoid: wastewater ye ASMAG522
      • AAI clade 29-1-50 medoid: wastewater ye ASMAG138
      • AAI clade 29-1-51 medoid: wastewater ye ASMAG1576
      • AAI clade 29-1-52 medoid: wastewater ye ASMAG1769
      • AAI clade 29-1-53 medoid: wastewater ye ASMAG232
      • AAI clade 29-1-54 medoid: wastewater ye ASMAG35
      • AAI clade 29-1-55 medoid: wastewater ye ASMAG510
      • AAI clade 29-1-56 medoid: wastewater ye ASMAG509
      • AAI clade 29-1-57 medoid: wastewater ye ASMAG63
      • AAI clade 29-1-58 medoid: wastewater ye ASMAG73
      • AAI clade 29-1-59 medoid: wastewater ye ASMAG910
      • AAI clade 29-1-60 medoid: wastewater ye ASMAG973
    • AAI clade 29-2 medoid: 3300027835 197
    • AAI clade 29-3 medoid: 3300020447 25
    • AAI clade 29-4 medoid: 3300025648 37
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566