AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 28-1
medoid: 3300020204 60
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AAI clade 28-2
medoid: 3300017434 15
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AAI clade 28-3
medoid: wastewater ye ASMAG1029
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AAI clade 28-4
medoid: 3300025707 11
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AAI clade 28-5
medoid: wastewater ye ASMAG1605
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AAI clade 28-6
medoid: 3300027850 35
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AAI clade 28-7
medoid: wastewater GEMS 3300025714 2
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AAI clade 28-8
medoid: 3300023184 22
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AAI clade 28-9
medoid: 3300020477 11
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AAI clade 28-10
medoid: 3300027607 35
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AAI clade 28-11
medoid: 3300027852 41
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AAI clade 28-12
medoid: 3300013132 77
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AAI clade 28-13
medoid: 3300027337 3
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AAI clade 28-14
medoid: wastewater ye ASMAG927
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AAI clade 28-15
medoid: wastewater ye ASMAG369
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AAI clade 28-15-1
medoid: 3300007519 32
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AAI clade 28-15-2
medoid: 3300009083 124
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AAI clade 28-15-3
medoid: 3300027793 18
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AAI clade 28-15-4
medoid: wastewater GEMS 3300012956 60
7 datasets: 3300009084 111 (AAI: 53.39%), 3300009084 130 (AAI: 52.61%), 3300015360 63 (AAI: 51.7%), 3300020198 33 (AAI: 50.98%), wastewater GEMS 3300012956 60 (AAI: 100.0%), wastewater singleton GCA 016716165 1 ASM1671616v1 genomic (AAI: 51.76%), and wastewater ye ASMAG356 (AAI: 55.14%)
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AAI clade 28-15-5
medoid: 3300009702 85
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AAI clade 28-15-6
medoid: wastewater ye ASMAG421
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AAI clade 28-15-7
medoid: wastewater ye ASMAG183
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AAI clade 28-15-8
medoid: 3300027878 101
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AAI clade 28-15-9
medoid: wastewater GEMS 3300026516 46
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AAI clade 28-15-10
medoid: wastewater GEMS 3300027781 15
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AAI clade 28-15-11
medoid: wastewater singleton GCA 016709445 1 ASM1670944v1 genomic
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AAI clade 28-15-12
medoid: wastewater ye ASMAG1007
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AAI clade 28-15-13
medoid: wastewater ye ASMAG369
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AAI clade 28-15-14
medoid: wastewater ye ASMAG1730
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AAI clade 28-15-15
medoid: wastewater ye ASMAG773
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AAI clade 28-15-16
medoid: wastewater ye ASMAG811
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AAI clade 28-15-1
medoid: 3300007519 32
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AAI clade 28-16
medoid: 3300027963 10
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AAI clade 28-17
medoid: 3300027299 1
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AAI clade 28-18
medoid: 3300020466 13
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AAI clade 28-19
medoid: 3300017788 33
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AAI clade 28-20
medoid: 3300028177 19
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AAI clade 28-21
medoid: 3300012950 8
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AAI clade 28-22
medoid: wastewater GEMS 3300025631 17
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AAI clade 28-23
medoid: 3300020428 10
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AAI clade 28-24
medoid: 3300025477 10
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AAI clade 28-25
medoid: wastewater ye ASMAG1243
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AAI clade 28-1
medoid: 3300020204 60
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566