AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 27-1
medoid: 3300027834 52
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AAI clade 27-2
medoid: 3300020388 27
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AAI clade 27-2-1
medoid: 3300025874 44
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AAI clade 27-2-2
medoid: 3300005662 91
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AAI clade 27-2-2-1
medoid: 3300005662 91
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AAI clade 27-2-2-1-1
medoid: 3300005662 91
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AAI clade 27-2-2-1-1-1
medoid: 3300005662 91
4 datasets: 3300027689 12 (AAI: 65.24%), 3300005662 58 (AAI: 66.0%), 3300005662 91 (AAI: 100.0%), and 3300013094 14 (AAI: 58.71%)
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AAI clade 27-2-2-1-1-2
medoid: 3300007517 46
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AAI clade 27-2-2-1-1-3
medoid: 3300021414 4
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AAI clade 27-2-2-1-1-4
medoid: 3300024908 4
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AAI clade 27-2-2-1-1-5
medoid: 3300028569 46
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AAI clade 27-2-2-1-1-6
medoid: 3300029902 14
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AAI clade 27-2-2-1-1-7
medoid: chicken GCA 019114715 1
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AAI clade 27-2-2-1-1-8
medoid: chicken GCA 019115805 1
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AAI clade 27-2-2-1-1-9
medoid: wastewater GEMS 3300025686 14
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AAI clade 27-2-2-1-1-1
medoid: 3300005662 91
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AAI clade 27-2-2-1-2
medoid: 3300021142 8
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AAI clade 27-2-2-1-3
medoid: wastewater GEMS 3300029311 21
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AAI clade 27-2-2-1-4
medoid: wastewater ye ASMAG345
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AAI clade 27-2-2-1-5
medoid: wastewater ye ASMAG465
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AAI clade 27-2-2-1-1
medoid: 3300005662 91
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AAI clade 27-2-2-2
medoid: 3300000234 49
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AAI clade 27-2-2-3
medoid: wastewater ye ASMAG703
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AAI clade 27-2-2-1
medoid: 3300005662 91
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AAI clade 27-2-3
medoid: pig Boar s11 bin 6
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AAI clade 27-2-4
medoid: 3300020388 27
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AAI clade 27-2-5
medoid: wastewater GEMS 3300025702 20
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AAI clade 27-2-6
medoid: 3300020440 42
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AAI clade 27-2-7
medoid: 3300013122 14
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AAI clade 27-2-8
medoid: 3300020422 11
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AAI clade 27-2-9
medoid: 3300008012 9
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AAI clade 27-2-10
medoid: 3300024970 3
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AAI clade 27-2-11
medoid: 3300028557 46
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AAI clade 27-2-12
medoid: 3300025128 6
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AAI clade 27-2-13
medoid: 3300027685 34
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AAI clade 27-2-14
medoid: 3300027804 27
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AAI clade 27-2-15
medoid: 3300027963 20
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AAI clade 27-2-16
medoid: 3300010354 59
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AAI clade 27-2-17
medoid: 3300025897 32
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AAI clade 27-2-18
medoid: wastewater ye ASMAG370
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AAI clade 27-2-19
medoid: wastewater ye ASMAG818
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AAI clade 27-2-20
medoid: 3300027752 23
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AAI clade 27-2-21
medoid: 3300022929 29
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AAI clade 27-2-22
medoid: wastewater ye ASMAG428
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AAI clade 27-2-23
medoid: 3300025832 27
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AAI clade 27-2-24
medoid: wastewater singleton GCA 016718035 1 ASM1671803v1 genomic
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AAI clade 27-2-25
medoid: wastewater GEMS 3300009540 35
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AAI clade 27-2-26
medoid: wastewater singleton GCA 016717725 1 ASM1671772v1 genomic
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AAI clade 27-2-27
medoid: wastewater ye ASMAG1416
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AAI clade 27-2-28
medoid: wastewater ye ASMAG1135
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AAI clade 27-2-29
medoid: wastewater ye ASMAG1387
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AAI clade 27-2-1
medoid: 3300025874 44
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AAI clade 27-3
medoid: wastewater ye ASMAG1431
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AAI clade 27-4
medoid: wastewater singleton GCA 016707115 1 ASM1670711v1 genomic
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AAI clade 27-5
medoid: 3300027870 45
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AAI clade 27-6
medoid: 3300013131 106
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AAI clade 27-7
medoid: 3300027963 13
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AAI clade 27-8
medoid: wastewater singleton GCA 016712535 1 ASM1671253v1 genomic
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AAI clade 27-9
medoid: wastewater singleton GCA 016708845 1 ASM1670884v1 genomic
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AAI clade 27-1
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566