AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: human MGYG000000946
• AAI clade 2 medoid: human MGYG000000019
• AAI clade 3 medoid: human MGYG000003370
• AAI clade 4 medoid: 3300027323 37
• AAI clade 5 medoid: human MGYG000004185
• AAI clade 6 medoid: human MGYG000001010
• AAI clade 7 medoid: wastewater GEMS 3300025861 51
• AAI clade 8 medoid: human MGYG000002603
• AAI clade 9 medoid: 3300024953 8
• AAI clade 10 medoid: 3300017423 5
• AAI clade 11 medoid: pig GCA 946405745 1
• AAI clade 12 medoid: 3300006192 20
• AAI clade 13 medoid: pig LW1 s150947 bin 23
• AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
• AAI clade 15 medoid: pig MGYG000302081
• AAI clade 16 medoid: human MGYG000000545
• AAI clade 17 medoid: human MGYG000003895
• AAI clade 18 medoid: chicken MGYG000313561
• AAI clade 19 medoid: 3300024912 1
• AAI clade 20 medoid: human MGYG000002619
• AAI clade 21 medoid: human MGYG000002428
• AAI clade 22 medoid: 3300027805 13
• AAI clade 23 medoid: chicken MGYG000314833
• AAI clade 24 medoid: wastewater GEMS 3300027794 31
• AAI clade 25 medoid: human MGYG000004406
• AAI clade 26 medoid: pig MGYG000301788
• AAI clade 27 medoid: 3300027834 52
  • AAI clade 27-1 medoid: 3300027834 52
    • AAI clade 27-1-1 medoid: 3300027834 52
      • AAI clade 27-1-1-1 medoid: 3300027834 52
        • AAI clade 27-1-1-1-1 medoid: 3300027834 52
          • AAI clade 27-1-1-1-1-1 medoid: 3300027834 52
          • AAI clade 27-1-1-1-1-2 medoid: 3300025570 12
            • AAI clade 27-1-1-1-1-2-1 medoid: 3300020385 28
            • AAI clade 27-1-1-1-1-2-2 medoid: 3300025617 34
            • AAI clade 27-1-1-1-1-2-3 medoid: 3300000171 12
            • AAI clade 27-1-1-1-1-2-4 medoid: 3300023084 48
            • AAI clade 27-1-1-1-1-2-5 medoid: 3300024313 9
            • AAI clade 27-1-1-1-1-2-6 medoid: 3300025570 12
            • AAI clade 27-1-1-1-1-2-7 medoid: 3300025719 39
          • AAI clade 27-1-1-1-1-3 medoid: 3300025809 51
        • AAI clade 27-1-1-1-2 medoid: 3300020474 30
        • AAI clade 27-1-1-1-3 medoid: 3300027983 81
        • AAI clade 27-1-1-1-4 medoid: wastewater GEMS 3300009704 44
      • AAI clade 27-1-1-2 medoid: wastewater GEMS 3300026302 24
    • AAI clade 27-1-2 medoid: wastewater GEMS 3300012020 5
    • AAI clade 27-1-3 medoid: 3300027687 28
    • AAI clade 27-1-4 medoid: 3300024313 10
    • AAI clade 27-1-5 medoid: 3300027834 57
    • AAI clade 27-1-6 medoid: wastewater singleton GCA 016721245 1 ASM1672124v1 genomic
    • AAI clade 27-1-7 medoid: wastewater ye ASMAG327
  • AAI clade 27-2 medoid: 3300020388 27
  • AAI clade 27-3 medoid: wastewater ye ASMAG1431
  • AAI clade 27-4 medoid: wastewater singleton GCA 016707115 1 ASM1670711v1 genomic
  • AAI clade 27-5 medoid: 3300027870 45
  • AAI clade 27-6 medoid: 3300013131 106
  • AAI clade 27-7 medoid: 3300027963 13
  • AAI clade 27-8 medoid: wastewater singleton GCA 016712535 1 ASM1671253v1 genomic
  • AAI clade 27-9 medoid: wastewater singleton GCA 016708845 1 ASM1670884v1 genomic
• AAI clade 28 medoid: 3300020389 13
• AAI clade 29 medoid: 3300027835 270
• AAI clade 30 medoid: 3300013004 97
• AAI clade 31 medoid: 3300025065 6
• AAI clade 32 medoid: human MGYG000004800
• AAI clade 33 medoid: ruminant GCA 015060255 1
• AAI clade 34 medoid: chicken GCA 019115885 1
• AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
• AAI clade 36 medoid: human MGYG000000998
• AAI clade 37 medoid: 3300012919 27
• AAI clade 38 medoid: 3300027851 42
• AAI clade 39 medoid: wastewater ye ASMAG566