AAI clade 26-2-3-3 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
- AAI clade 26-1 medoid: pig MGYG000302010
- AAI clade 26-2 medoid: pig MGYG000301788
  - AAI clade 26-2-1 medoid: human MGYG000004341
  - AAI clade 26-2-2 medoid: pig SAMEA3663230 metabat2 low PE 017
  - AAI clade 26-2-3 medoid: chicken CHCFR05602 maxbin2 high prob 033
    
    AAI clade 26-2-3-1 medoid: human MGYG000003057
    
    AAI clade 26-2-3-2 medoid: chicken DSLFC04101 metabat2 low PE 021
    
    AAI clade 26-2-3-3 medoid: chicken GCA 018715835 1
    
    1 dataset: chicken GCA 018715835 1 (AAI: 100.0%)
    
    AAI clade 26-2-3-4 medoid: dog Mya p2 maxbin2 low prob 016
    
    AAI clade 26-2-3-5 medoid: pig LW2 s127145 bin 7
    
    AAI clade 26-2-3-6 medoid: ruminant GCA 015067605 1
    
    AAI clade 26-2-3-7 medoid: ruminant GCA 015067615 1
    
    AAI clade 26-2-3-8 medoid: ruminant GCA 015068305 1
  - AAI clade 26-2-4 medoid: human MGYG000003293
  - AAI clade 26-2-5 medoid: chicken MGYG000314684
  - AAI clade 26-2-6 medoid: pig LW2 s126572 bin 61
  - AAI clade 26-2-7 medoid: human MGYG000004262
  - AAI clade 26-2-8 medoid: pig MGYG000301280
  - AAI clade 26-2-9 medoid: human MGYG000001818
  - AAI clade 26-2-10 medoid: pig MGYG000301746
  - AAI clade 26-2-11 medoid: pig MGYG000300477
  - AAI clade 26-2-12 medoid: pig BL unmapped bin 306
  - AAI clade 26-2-13 medoid: pig BL unmapped bin 394
  - AAI clade 26-2-14 medoid: pig MGYG000302451
  - AAI clade 26-2-15 medoid: pig F4726 bin 10
  - AAI clade 26-2-16 medoid: pig F4930 bin 1
  - AAI clade 26-2-17 medoid: pig F5084 bin 36
  - AAI clade 26-2-18 medoid: pig QHF6 unmapped bin 756
  - AAI clade 26-2-19 medoid: ruminant GCA 015063545 1
  - AAI clade 26-2-20 medoid: ruminant GCA 015063765 1
  - AAI clade 26-2-21 medoid: ruminant GCA 015067545 1
  - AAI clade 26-2-22 medoid: ruminant GCA 015067785 1
- AAI clade 26-3 medoid: human MGYG000002993
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

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