AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 26-1
medoid: pig MGYG000302010
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AAI clade 26-2
medoid: pig MGYG000301788
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AAI clade 26-2-1
medoid: human MGYG000004341
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AAI clade 26-2-2
medoid: pig SAMEA3663230 metabat2 low PE 017
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AAI clade 26-2-3
medoid: chicken CHCFR05602 maxbin2 high prob 033
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AAI clade 26-2-4
medoid: human MGYG000003293
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AAI clade 26-2-5
medoid: chicken MGYG000314684
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AAI clade 26-2-6
medoid: pig LW2 s126572 bin 61
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AAI clade 26-2-7
medoid: human MGYG000004262
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AAI clade 26-2-8
medoid: pig MGYG000301280
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AAI clade 26-2-9
medoid: human MGYG000001818
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AAI clade 26-2-10
medoid: pig MGYG000301746
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AAI clade 26-2-10-1
medoid: human MGYG000002124
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AAI clade 26-2-10-2
medoid: pig MGYG000301746
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AAI clade 26-2-10-2-1
medoid: pig MGYG000301788
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AAI clade 26-2-10-2-2
medoid: pig Duroc SH FCR HM4 bin 1
1 dataset: pig Duroc SH FCR HM4 bin 1 (AAI: 100.0%)
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AAI clade 26-2-10-2-3
medoid: pig F4595 bin 23
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AAI clade 26-2-10-2-4
medoid: pig F5457 bin 28
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AAI clade 26-2-10-2-5
medoid: pig MGYG000299729
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AAI clade 26-2-10-2-6
medoid: pig MGYG000302253
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AAI clade 26-2-10-2-1
medoid: pig MGYG000301788
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AAI clade 26-2-10-3
medoid: pig LW1 s150971 bin 9
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AAI clade 26-2-10-1
medoid: human MGYG000002124
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AAI clade 26-2-11
medoid: pig MGYG000300477
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AAI clade 26-2-12
medoid: pig BL unmapped bin 306
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AAI clade 26-2-13
medoid: pig BL unmapped bin 394
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AAI clade 26-2-14
medoid: pig MGYG000302451
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AAI clade 26-2-15
medoid: pig F4726 bin 10
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AAI clade 26-2-16
medoid: pig F4930 bin 1
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AAI clade 26-2-17
medoid: pig F5084 bin 36
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AAI clade 26-2-18
medoid: pig QHF6 unmapped bin 756
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AAI clade 26-2-19
medoid: ruminant GCA 015063545 1
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AAI clade 26-2-20
medoid: ruminant GCA 015063765 1
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AAI clade 26-2-21
medoid: ruminant GCA 015067545 1
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AAI clade 26-2-22
medoid: ruminant GCA 015067785 1
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AAI clade 26-2-1
medoid: human MGYG000004341
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AAI clade 26-3
medoid: human MGYG000002993
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AAI clade 26-1
medoid: pig MGYG000302010
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566