AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 24-1
medoid: pig F5115 bin 23
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AAI clade 24-2
medoid: 3300025532 7
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AAI clade 24-3
medoid: 3300027851 28
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AAI clade 24-4
medoid: wastewater GEMS 3300027794 31
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AAI clade 24-4-1
medoid: wastewater ye ASMAG1957
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AAI clade 24-4-1-1
medoid: 3300025892 13
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AAI clade 24-4-1-2
medoid: 3300027963 199
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AAI clade 24-4-1-3
medoid: 3300006330 4
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AAI clade 24-4-1-4
medoid: wastewater GEMS 3300026283 7
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AAI clade 24-4-1-5
medoid: 3300027668 9
4 datasets: 3300011927 4 (AAI: 62.02%), 3300025027 2 (AAI: 94.97%), 3300027668 9 (AAI: 100.0%), and wastewater GEMS 3300023187 8 (AAI: 61.87%)
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AAI clade 24-4-1-6
medoid: 3300012527 18
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AAI clade 24-4-1-7
medoid: 3300023174 46
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AAI clade 24-4-1-8
medoid: 3300027820 32
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AAI clade 24-4-1-9
medoid: 3300027834 55
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AAI clade 24-4-1-10
medoid: wastewater GEMS 3300006056 78
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AAI clade 24-4-1-11
medoid: 3300027980 49
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AAI clade 24-4-1-12
medoid: wastewater singleton GCA 016704425 1 ASM1670442v1 genomic
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AAI clade 24-4-1-13
medoid: wastewater singleton GCA 016714795 1 ASM1671479v1 genomic
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AAI clade 24-4-1-14
medoid: wastewater ye ASMAG55
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AAI clade 24-4-1-15
medoid: wastewater ye ASMAG921
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AAI clade 24-4-1-1
medoid: 3300025892 13
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AAI clade 24-4-2
medoid: wastewater GEMS 3300027794 31
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AAI clade 24-4-3
medoid: 3300025040 3
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AAI clade 24-4-1
medoid: wastewater ye ASMAG1957
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AAI clade 24-5
medoid: ruminant GCA 015062495 1
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AAI clade 24-6
medoid: human MGYG000004521
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AAI clade 24-7
medoid: 3300025701 13
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AAI clade 24-8
medoid: 3300025093 16
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AAI clade 24-9
medoid: 3300025079 6
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AAI clade 24-10
medoid: 3300020595 20
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AAI clade 24-11
medoid: 3300022752 22
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AAI clade 24-12
medoid: wastewater ye ASMAG1257
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AAI clade 24-13
medoid: 3300025690 33
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AAI clade 24-1
medoid: pig F5115 bin 23
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566