AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 24-1
medoid: pig F5115 bin 23
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AAI clade 24-2
medoid: 3300025532 7
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AAI clade 24-2-1
medoid: 3300013131 110
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AAI clade 24-2-2
medoid: 3300002092 1
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AAI clade 24-2-3
medoid: 3300020213 32
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AAI clade 24-2-4
medoid: human MGYG000002827
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AAI clade 24-2-5
medoid: wastewater singleton GCA 016710435 1 ASM1671043v1 genomic
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AAI clade 24-2-6
medoid: wastewater GEMS 3300026289 4
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AAI clade 24-2-7
medoid: 3300016461 5
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AAI clade 24-2-8
medoid: wastewater GEMS 3300026302 21
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AAI clade 24-2-9
medoid: 3300020200 73
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AAI clade 24-2-10
medoid: 3300025435 3
8 datasets: 3300020220 63 (AAI: 63.06%), 3300020732 5 (AAI: 92.92%), 3300022602 34 (AAI: 52.37%), 3300025424 3 (AAI: 53.95%), 3300025435 3 (AAI: 100.0%), 3300025532 7 (AAI: 76.63%), 3300027760 38 (AAI: 57.49%), and 3300027804 19 (AAI: 60.86%)
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AAI clade 24-2-11
medoid: human MGYG000003734
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AAI clade 24-2-12
medoid: wastewater singleton GCA 016713235 1 ASM1671323v1 genomic
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AAI clade 24-2-13
medoid: wastewater ye ASMAG1914
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AAI clade 24-2-14
medoid: wastewater ye ASMAG1493
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AAI clade 24-2-1
medoid: 3300013131 110
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AAI clade 24-3
medoid: 3300027851 28
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AAI clade 24-4
medoid: wastewater GEMS 3300027794 31
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AAI clade 24-5
medoid: ruminant GCA 015062495 1
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AAI clade 24-6
medoid: human MGYG000004521
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AAI clade 24-7
medoid: 3300025701 13
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AAI clade 24-8
medoid: 3300025093 16
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AAI clade 24-9
medoid: 3300025079 6
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AAI clade 24-10
medoid: 3300020595 20
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AAI clade 24-11
medoid: 3300022752 22
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AAI clade 24-12
medoid: wastewater ye ASMAG1257
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AAI clade 24-13
medoid: 3300025690 33
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AAI clade 24-1
medoid: pig F5115 bin 23
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566