AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 22-1
medoid: pig F5179 bin 5
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AAI clade 22-2
medoid: human MGYG000000720
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AAI clade 22-3
medoid: chicken MGYG000318664
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AAI clade 22-4
medoid: 3300021131 3
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AAI clade 22-5
medoid: 3300027805 13
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AAI clade 22-6
medoid: wastewater ye ASMAG1664
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AAI clade 22-6-1
medoid: 3300027746 7
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AAI clade 22-6-2
medoid: 3300001683 13
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AAI clade 22-6-3
medoid: 3300018018 28
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AAI clade 22-6-4
medoid: wastewater ye ASMAG1664
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AAI clade 22-6-5
medoid: 3300012920 29
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AAI clade 22-6-6
medoid: wastewater ye ASMAG786
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AAI clade 22-6-7
medoid: 3300013132 16
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AAI clade 22-6-8
medoid: wastewater GEMS 3300025730 6
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AAI clade 22-6-9
medoid: 3300017958 27
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AAI clade 22-6-10
medoid: 3300020054 16
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AAI clade 22-6-11
medoid: wastewater ye ASMAG245
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AAI clade 22-6-12
medoid: 3300020695 2
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AAI clade 22-6-13
medoid: 3300024054 34
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AAI clade 22-6-14
medoid: 3300025409 9
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AAI clade 22-6-15
medoid: 3300027801 21
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AAI clade 22-6-16
medoid: 3300027832 18
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AAI clade 22-6-17
medoid: 3300027878 23
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AAI clade 22-6-18
medoid: wastewater ye ASMAG417
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AAI clade 22-6-19
medoid: wastewater ye ASMAG30
2 datasets: wastewater singleton GCA 016716505 1 ASM1671650v1 genomic (AAI: 57.56%) and wastewater ye ASMAG30 (AAI: 100.0%)
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AAI clade 22-6-20
medoid: wastewater ye ASMAG1281
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AAI clade 22-6-21
medoid: wastewater ye ASMAG596
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AAI clade 22-6-1
medoid: 3300027746 7
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AAI clade 22-7
medoid: goat norm metabat 32
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AAI clade 22-8
medoid: human MGYG000000604
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AAI clade 22-9
medoid: human MGYG000003479
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AAI clade 22-10
medoid: pig GCA 016296065 1
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AAI clade 22-11
medoid: 3300027832 23
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AAI clade 22-12
medoid: 3300025816 12
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AAI clade 22-13
medoid: 3300027833 14
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AAI clade 22-14
medoid: 3300012954 32
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AAI clade 22-15
medoid: 3300028287 8
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AAI clade 22-16
medoid: wastewater GEMS 3300002702 10
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AAI clade 22-17
medoid: 3300013014 21
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AAI clade 22-18
medoid: 3300025466 8
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AAI clade 22-19
medoid: 3300013094 19
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AAI clade 22-20
medoid: 3300020463 35
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AAI clade 22-21
medoid: 3300021120 2
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AAI clade 22-22
medoid: 3300025890 60
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AAI clade 22-23
medoid: 3300020601 18
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AAI clade 22-24
medoid: pig Tibetan s3800 18M bin 6
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AAI clade 22-25
medoid: ruminant GCA 015061685 1
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AAI clade 22-1
medoid: pig F5179 bin 5
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566