AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
    • AAI clade 22-1 medoid: pig F5179 bin 5
    • AAI clade 22-2 medoid: human MGYG000000720
    • AAI clade 22-3 medoid: chicken MGYG000318664
    • AAI clade 22-4 medoid: 3300021131 3
    • AAI clade 22-5 medoid: 3300027805 13
    • AAI clade 22-6 medoid: wastewater ye ASMAG1664
    • AAI clade 22-7 medoid: goat norm metabat 32
    • AAI clade 22-8 medoid: human MGYG000000604
    • AAI clade 22-9 medoid: human MGYG000003479
    • AAI clade 22-10 medoid: pig GCA 016296065 1
    • AAI clade 22-11 medoid: 3300027832 23
    • AAI clade 22-12 medoid: 3300025816 12
      • AAI clade 22-12-1 medoid: 3300027801 13
      • AAI clade 22-12-2 medoid: 3300025816 12
      • AAI clade 22-12-3 medoid: 3300023271 4
        1 dataset: 3300023271 4 (AAI: 100.0%)
      • AAI clade 22-12-4 medoid: 3300025874 62
      • AAI clade 22-12-5 medoid: 3300027077 2
    • AAI clade 22-13 medoid: 3300027833 14
    • AAI clade 22-14 medoid: 3300012954 32
    • AAI clade 22-15 medoid: 3300028287 8
    • AAI clade 22-16 medoid: wastewater GEMS 3300002702 10
    • AAI clade 22-17 medoid: 3300013014 21
    • AAI clade 22-18 medoid: 3300025466 8
    • AAI clade 22-19 medoid: 3300013094 19
    • AAI clade 22-20 medoid: 3300020463 35
    • AAI clade 22-21 medoid: 3300021120 2
    • AAI clade 22-22 medoid: 3300025890 60
    • AAI clade 22-23 medoid: 3300020601 18
    • AAI clade 22-24 medoid: pig Tibetan s3800 18M bin 6
    • AAI clade 22-25 medoid: ruminant GCA 015061685 1
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566