AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: human MGYG000000946
-
AAI clade 2
medoid: human MGYG000000019
-
AAI clade 2-1
medoid: human MGYG000000108
-
AAI clade 2-2
medoid: cow GCA 021533285 1
-
AAI clade 2-3
medoid: dog Oklahoma p2 metabat2 high PE 034
-
AAI clade 2-4
medoid: human MGYG000001857
-
AAI clade 2-5
medoid: 3300021365 22
-
AAI clade 2-6
medoid: human MGYG000002467
-
AAI clade 2-6-1
medoid: human MGYG000002350
6 datasets: bird GCA 002269665 1 (AAI: 83.62%), cow GCA 021533385 1 (AAI: 97.63%), human MGYG000002350 (AAI: 100.0%), human MGYG000002474 (AAI: 73.39%), human MGYG000002518 (AAI: 98.32%), and human MGYG000003712 (AAI: 87.01%)
-
AAI clade 2-6-2
medoid: human MGYG000001393
-
AAI clade 2-6-3
medoid: human MGYG000002458
-
AAI clade 2-6-4
medoid: human MGYG000002385
-
AAI clade 2-6-5
medoid: human MGYG000003123
-
AAI clade 2-6-1
medoid: human MGYG000002350
-
AAI clade 2-7
medoid: human MGYG000001703
-
AAI clade 2-8
medoid: human MGYG000002498
-
AAI clade 2-9
medoid: human MGYG000002631
-
AAI clade 2-10
medoid: human MGYG000002526
-
AAI clade 2-11
medoid: 3300025251 4
-
AAI clade 2-12
medoid: 3300020476 5
-
AAI clade 2-13
medoid: 3300025251 5
-
AAI clade 2-14
medoid: 3300029818 6
-
AAI clade 2-15
medoid: human MGYG000001323
-
AAI clade 2-16
medoid: human MGYG000003386
-
AAI clade 2-1
medoid: human MGYG000000108
-
AAI clade 3
medoid: human MGYG000003370
-
AAI clade 4
medoid: 3300027323 37
-
AAI clade 5
medoid: human MGYG000004185
-
AAI clade 6
medoid: human MGYG000001010
-
AAI clade 7
medoid: wastewater GEMS 3300025861 51
-
AAI clade 8
medoid: human MGYG000002603
-
AAI clade 9
medoid: 3300024953 8
-
AAI clade 10
medoid: 3300017423 5
-
AAI clade 11
medoid: pig GCA 946405745 1
-
AAI clade 12
medoid: 3300006192 20
-
AAI clade 13
medoid: pig LW1 s150947 bin 23
-
AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
-
AAI clade 15
medoid: pig MGYG000302081
-
AAI clade 16
medoid: human MGYG000000545
-
AAI clade 17
medoid: human MGYG000003895
-
AAI clade 18
medoid: chicken MGYG000313561
-
AAI clade 19
medoid: 3300024912 1
-
AAI clade 20
medoid: human MGYG000002619
-
AAI clade 21
medoid: human MGYG000002428
-
AAI clade 22
medoid: 3300027805 13
-
AAI clade 23
medoid: chicken MGYG000314833
-
AAI clade 24
medoid: wastewater GEMS 3300027794 31
-
AAI clade 25
medoid: human MGYG000004406
-
AAI clade 26
medoid: pig MGYG000301788
-
AAI clade 27
medoid: 3300027834 52
-
AAI clade 28
medoid: 3300020389 13
-
AAI clade 29
medoid: 3300027835 270
-
AAI clade 30
medoid: 3300013004 97
-
AAI clade 31
medoid: 3300025065 6
-
AAI clade 32
medoid: human MGYG000004800
-
AAI clade 33
medoid: ruminant GCA 015060255 1
-
AAI clade 34
medoid: chicken GCA 019115885 1
-
AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
-
AAI clade 36
medoid: human MGYG000000998
-
AAI clade 37
medoid: 3300012919 27
-
AAI clade 38
medoid: 3300027851 42
-
AAI clade 39
medoid: wastewater ye ASMAG566