AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 19-1
medoid: 3300024912 1
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AAI clade 19-1-1
medoid: 3300024353 9
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AAI clade 19-1-2
medoid: 3300024953 6
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AAI clade 19-1-3
medoid: 3300024912 1
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AAI clade 19-1-4
medoid: 3300024892 1
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AAI clade 19-1-5
medoid: 3300027971 14
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AAI clade 19-1-6
medoid: 3300020686 2
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AAI clade 19-1-7
medoid: 3300024935 1
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AAI clade 19-1-8
medoid: 3300027339 2
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AAI clade 19-1-8-1
medoid: 3300014613 11
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AAI clade 19-1-8-2
medoid: 3300027339 2
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AAI clade 19-1-8-2-1
medoid: 3300005805 16
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AAI clade 19-1-8-2-2
medoid: 3300017453 8
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AAI clade 19-1-8-2-3
medoid: 3300020407 4
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AAI clade 19-1-8-2-4
medoid: 3300027339 2
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AAI clade 19-1-8-2-5
medoid: 3300024954 2
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AAI clade 19-1-8-2-6
medoid: 3300024975 8
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AAI clade 19-1-8-2-7
medoid: human MGYG000001923
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AAI clade 19-1-8-2-8
medoid: wastewater GEMS 3300026288 4
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AAI clade 19-1-8-2-9
medoid: wastewater singleton GCA 016702605 1 ASM1670260v1 genomic
1 dataset: wastewater singleton GCA 016702605 1 ASM1670260v1 genomic (AAI: 100.0%)
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AAI clade 19-1-8-2-10
medoid: wastewater singleton GCA 016703325 1 ASM1670332v1 genomic
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AAI clade 19-1-8-2-11
medoid: wastewater ye ASMAG2020
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AAI clade 19-1-8-2-12
medoid: wastewater singleton GCA 016720945 1 ASM1672094v1 genomic
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AAI clade 19-1-8-2-13
medoid: wastewater ye ASMAG497
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AAI clade 19-1-8-2-14
medoid: wastewater ye ASMAG1355
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AAI clade 19-1-8-2-15
medoid: wastewater ye ASMAG1437
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AAI clade 19-1-8-2-16
medoid: wastewater ye ASMAG1488
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AAI clade 19-1-8-2-17
medoid: wastewater ye ASMAG1579
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AAI clade 19-1-8-2-18
medoid: wastewater ye ASMAG1854
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AAI clade 19-1-8-2-19
medoid: wastewater ye ASMAG2012
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AAI clade 19-1-8-2-20
medoid: wastewater ye ASMAG2019
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AAI clade 19-1-8-2-21
medoid: wastewater ye ASMAG678
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AAI clade 19-1-8-2-22
medoid: wastewater ye ASMAG67
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AAI clade 19-1-8-2-1
medoid: 3300005805 16
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AAI clade 19-1-8-1
medoid: 3300014613 11
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AAI clade 19-1-9
medoid: 3300028559 30
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AAI clade 19-1-10
medoid: 3300029821 12
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AAI clade 19-1-11
medoid: wastewater ye ASMAG209
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AAI clade 19-1-12
medoid: wastewater ye ASMAG76
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AAI clade 19-1-13
medoid: 3300027973 19
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AAI clade 19-1-14
medoid: 3300027770 44
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AAI clade 19-1-15
medoid: wastewater GEMS 3300025683 11
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AAI clade 19-1-1
medoid: 3300024353 9
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AAI clade 19-2
medoid: 3300010160 10
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AAI clade 19-1
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566