AAI clade 19-1-8-2-9 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
- AAI clade 19-1 medoid: 3300024912 1
  - AAI clade 19-1-1 medoid: 3300024353 9
  - AAI clade 19-1-2 medoid: 3300024953 6
  - AAI clade 19-1-3 medoid: 3300024912 1
  - AAI clade 19-1-4 medoid: 3300024892 1
  - AAI clade 19-1-5 medoid: 3300027971 14
  - AAI clade 19-1-6 medoid: 3300020686 2
  - AAI clade 19-1-7 medoid: 3300024935 1
  - AAI clade 19-1-8 medoid: 3300027339 2
    
    AAI clade 19-1-8-1 medoid: 3300014613 11
    
    AAI clade 19-1-8-2 medoid: 3300027339 2
    
    AAI clade 19-1-8-2-1 medoid: 3300005805 16
    
    AAI clade 19-1-8-2-2 medoid: 3300017453 8
    
    AAI clade 19-1-8-2-3 medoid: 3300020407 4
    
    AAI clade 19-1-8-2-4 medoid: 3300027339 2
    
    AAI clade 19-1-8-2-5 medoid: 3300024954 2
    
    AAI clade 19-1-8-2-6 medoid: 3300024975 8
    
    AAI clade 19-1-8-2-7 medoid: human MGYG000001923
    
    AAI clade 19-1-8-2-8 medoid: wastewater GEMS 3300026288 4
    
    AAI clade 19-1-8-2-9 medoid: wastewater singleton GCA 016702605 1 ASM1670260v1 genomic
    
    1 dataset: wastewater singleton GCA 016702605 1 ASM1670260v1 genomic (AAI: 100.0%)
    
    AAI clade 19-1-8-2-10 medoid: wastewater singleton GCA 016703325 1 ASM1670332v1 genomic
    
    AAI clade 19-1-8-2-11 medoid: wastewater ye ASMAG2020
    
    AAI clade 19-1-8-2-12 medoid: wastewater singleton GCA 016720945 1 ASM1672094v1 genomic
    
    AAI clade 19-1-8-2-13 medoid: wastewater ye ASMAG497
    
    AAI clade 19-1-8-2-14 medoid: wastewater ye ASMAG1355
    
    AAI clade 19-1-8-2-15 medoid: wastewater ye ASMAG1437
    
    AAI clade 19-1-8-2-16 medoid: wastewater ye ASMAG1488
    
    AAI clade 19-1-8-2-17 medoid: wastewater ye ASMAG1579
    
    AAI clade 19-1-8-2-18 medoid: wastewater ye ASMAG1854
    
    AAI clade 19-1-8-2-19 medoid: wastewater ye ASMAG2012
    
    AAI clade 19-1-8-2-20 medoid: wastewater ye ASMAG2019
    
    AAI clade 19-1-8-2-21 medoid: wastewater ye ASMAG678
    
    AAI clade 19-1-8-2-22 medoid: wastewater ye ASMAG67
  - AAI clade 19-1-9 medoid: 3300028559 30
  - AAI clade 19-1-10 medoid: 3300029821 12
  - AAI clade 19-1-11 medoid: wastewater ye ASMAG209
  - AAI clade 19-1-12 medoid: wastewater ye ASMAG76
  - AAI clade 19-1-13 medoid: 3300027973 19
  - AAI clade 19-1-14 medoid: 3300027770 44
  - AAI clade 19-1-15 medoid: wastewater GEMS 3300025683 11
- AAI clade 19-2 medoid: 3300010160 10
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

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