AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: human MGYG000000946
-
AAI clade 2
medoid: human MGYG000000019
-
AAI clade 3
medoid: human MGYG000003370
-
AAI clade 4
medoid: 3300027323 37
-
AAI clade 5
medoid: human MGYG000004185
-
AAI clade 6
medoid: human MGYG000001010
-
AAI clade 7
medoid: wastewater GEMS 3300025861 51
-
AAI clade 8
medoid: human MGYG000002603
-
AAI clade 9
medoid: 3300024953 8
-
AAI clade 10
medoid: 3300017423 5
-
AAI clade 11
medoid: pig GCA 946405745 1
-
AAI clade 12
medoid: 3300006192 20
-
AAI clade 13
medoid: pig LW1 s150947 bin 23
-
AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
-
AAI clade 15
medoid: pig MGYG000302081
-
AAI clade 16
medoid: human MGYG000000545
-
AAI clade 17
medoid: human MGYG000003895
-
AAI clade 18
medoid: chicken MGYG000313561
-
AAI clade 18-1
medoid: human MGYG000001420
-
AAI clade 18-2
medoid: ruminant GCA 015059845 1
-
AAI clade 18-3
medoid: chicken MGYG000308241
-
AAI clade 18-3-1
medoid: chicken GCA 019112925 1
-
AAI clade 18-3-2
medoid: chicken GCA 019113465 1
-
AAI clade 18-3-3
medoid: chicken MGYG000311677
-
AAI clade 18-3-4
medoid: chicken DSLFR04102 maxbin2 low prob 027
2 datasets: chicken LHCFC04200 maxbin2 low prob 010 (AAI: 78.14%) and chicken DSLFR04102 maxbin2 low prob 027 (AAI: 100.0%)
-
AAI clade 18-3-5
medoid: chicken MGYG000308241
-
AAI clade 18-3-6
medoid: chicken MGYG000310973
-
AAI clade 18-3-7
medoid: 3300027778 6
-
AAI clade 18-3-8
medoid: chicken GCA 019116245 1
-
AAI clade 18-3-9
medoid: chicken GCA 019119305 1
-
AAI clade 18-3-10
medoid: chicken MGYG000309475
-
AAI clade 18-3-11
medoid: chicken MGYG000313070
-
AAI clade 18-3-12
medoid: chicken MGYG000318472
-
AAI clade 18-3-13
medoid: human MGYG000001385
-
AAI clade 18-3-14
medoid: human MGYG000003018
-
AAI clade 18-3-15
medoid: human MGYG000003254
-
AAI clade 18-3-16
medoid: human MGYG000004469
-
AAI clade 18-3-1
medoid: chicken GCA 019112925 1
-
AAI clade 18-4
medoid: ruminant GCA 015060075 1
-
AAI clade 18-5
medoid: wastewater GEMS 3300009704 17
-
AAI clade 18-6
medoid: wastewater singleton GCA 016715075 1 ASM1671507v1 genomic
-
AAI clade 18-7
medoid: human MGYG000003539
-
AAI clade 18-8
medoid: human MGYG000003472
-
AAI clade 18-1
medoid: human MGYG000001420
-
AAI clade 19
medoid: 3300024912 1
-
AAI clade 20
medoid: human MGYG000002619
-
AAI clade 21
medoid: human MGYG000002428
-
AAI clade 22
medoid: 3300027805 13
-
AAI clade 23
medoid: chicken MGYG000314833
-
AAI clade 24
medoid: wastewater GEMS 3300027794 31
-
AAI clade 25
medoid: human MGYG000004406
-
AAI clade 26
medoid: pig MGYG000301788
-
AAI clade 27
medoid: 3300027834 52
-
AAI clade 28
medoid: 3300020389 13
-
AAI clade 29
medoid: 3300027835 270
-
AAI clade 30
medoid: 3300013004 97
-
AAI clade 31
medoid: 3300025065 6
-
AAI clade 32
medoid: human MGYG000004800
-
AAI clade 33
medoid: ruminant GCA 015060255 1
-
AAI clade 34
medoid: chicken GCA 019115885 1
-
AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
-
AAI clade 36
medoid: human MGYG000000998
-
AAI clade 37
medoid: 3300012919 27
-
AAI clade 38
medoid: 3300027851 42
-
AAI clade 39
medoid: wastewater ye ASMAG566