AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 18-1
medoid: human MGYG000001420
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AAI clade 18-1-1
medoid: chicken MGYG000313561
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AAI clade 18-1-2
medoid: human MGYG000002592
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AAI clade 18-1-3
medoid: chicken GCA 019112825 1
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AAI clade 18-1-4
medoid: chicken MGYG000309230
7 datasets: chicken GCA 019115075 1 (AAI: 74.35%), chicken GCA 019118565 1 (AAI: 65.86%), chicken GCA 019119455 1 (AAI: 79.28%), chicken GCA 019119845 1 (AAI: 72.24%), chicken MGYG000309230 (AAI: 100.0%), chicken GCA 019119615 1 (AAI: 88.48%), and pig LW1 s151487 bin 16 (AAI: 89.53%)
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AAI clade 18-1-5
medoid: human MGYG000000823
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AAI clade 18-1-6
medoid: human MGYG000001546
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AAI clade 18-1-7
medoid: ruminant GCA 015060045 1
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AAI clade 18-1-1
medoid: chicken MGYG000313561
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AAI clade 18-2
medoid: ruminant GCA 015059845 1
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AAI clade 18-3
medoid: chicken MGYG000308241
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AAI clade 18-4
medoid: ruminant GCA 015060075 1
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AAI clade 18-5
medoid: wastewater GEMS 3300009704 17
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AAI clade 18-6
medoid: wastewater singleton GCA 016715075 1 ASM1671507v1 genomic
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AAI clade 18-7
medoid: human MGYG000003539
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AAI clade 18-8
medoid: human MGYG000003472
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AAI clade 18-1
medoid: human MGYG000001420
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566