AAI clade 17-8-1-32 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
- AAI clade 17-1 medoid: human MGYG000003895
- AAI clade 17-2 medoid: human MGYG000000392
- AAI clade 17-3 medoid: human MGYG000000646
- AAI clade 17-4 medoid: chicken MGYG000313438
- AAI clade 17-5 medoid: human MGYG000004472
- AAI clade 17-6 medoid: human MGYG000001984
- AAI clade 17-7 medoid: pig MGYG000300534
- AAI clade 17-8 medoid: pig F5018 bin 47
  - AAI clade 17-8-1 medoid: pig F5018 bin 47
    
    AAI clade 17-8-1-1 medoid: 3300027800 46
    
    AAI clade 17-8-1-2 medoid: human MGYG000003843
    
    AAI clade 17-8-1-3 medoid: ruminant GCA 015069085 1
    
    AAI clade 17-8-1-4 medoid: 3300000318 23
    
    AAI clade 17-8-1-5 medoid: 3300005858 24
    
    AAI clade 17-8-1-6 medoid: 3300013125 93
    
    AAI clade 17-8-1-7 medoid: 3300013136 55
    
    AAI clade 17-8-1-8 medoid: 3300014200 10
    
    AAI clade 17-8-1-9 medoid: 3300020057 51
    
    AAI clade 17-8-1-10 medoid: 3300020195 55
    
    AAI clade 17-8-1-11 medoid: 3300026512 33
    
    AAI clade 17-8-1-12 medoid: 3300026519 69
    
    AAI clade 17-8-1-13 medoid: pig F4954 bin 38
    
    AAI clade 17-8-1-14 medoid: 3300027819 102
    
    AAI clade 17-8-1-15 medoid: 3300027835 113
    
    AAI clade 17-8-1-16 medoid: 3300027835 154
    
    AAI clade 17-8-1-17 medoid: 3300027835 87
    
    AAI clade 17-8-1-18 medoid: 3300028032 34
    
    AAI clade 17-8-1-19 medoid: 3300029449 18
    
    AAI clade 17-8-1-20 medoid: pig GCA 016293435 1
    
    AAI clade 17-8-1-21 medoid: pig F5604 bin 49
    
    AAI clade 17-8-1-22 medoid: human MGYG000003722
    
    AAI clade 17-8-1-23 medoid: human MGYG000003943
    
    AAI clade 17-8-1-24 medoid: pig W5021 bin 103
    
    AAI clade 17-8-1-25 medoid: pig BL unmapped bin 259
    
    AAI clade 17-8-1-26 medoid: ruminant GCA 015069135 1
    
    AAI clade 17-8-1-27 medoid: ruminant GCA 015068525 1
    
    AAI clade 17-8-1-28 medoid: wastewater ye ASMAG1921
    
    AAI clade 17-8-1-29 medoid: wastewater GEMS 3300009772 40
    
    AAI clade 17-8-1-30 medoid: wastewater GEMS 3300025730 17
    
    AAI clade 17-8-1-31 medoid: wastewater GEMS 3300025882 28
    
    AAI clade 17-8-1-32 medoid: wastewater ye ASMAG1475
    
    2 datasets: wastewater ye ASMAG1475 (AAI: 100.0%) and wastewater ye ASMAG382 (AAI: 77.67%)
    
    AAI clade 17-8-1-33 medoid: wastewater ye ASMAG402
  - AAI clade 17-8-2 medoid: ruminant GCA 015068855 1
  - AAI clade 17-8-3 medoid: 3300001683 28
  - AAI clade 17-8-4 medoid: 3300014208 125
  - AAI clade 17-8-5 medoid: 3300027844 42
  - AAI clade 17-8-6 medoid: 3300024353 83
  - AAI clade 17-8-7 medoid: 3300027709 15
- AAI clade 17-9 medoid: chicken GCA 018710915 1
- AAI clade 17-10 medoid: human MGYG000004807
- AAI clade 17-11 medoid: human MGYG000003428
- AAI clade 17-12 medoid: human MGYG000004779
- AAI clade 17-13 medoid: ruminant GCA 015063485 1
- AAI clade 17-14 medoid: pig Duroc SH FCR LM3 bin 14
- AAI clade 17-15 medoid: pig MGYG000302171
- AAI clade 17-16 medoid: pig Boar s14 bin 37
- AAI clade 17-17 medoid: wastewater GEMS 3300028568 30
- AAI clade 17-18 medoid: human MGYG000001569
- AAI clade 17-19 medoid: human MGYG000003456
- AAI clade 17-20 medoid: human MGYG000003844
- AAI clade 17-21 medoid: pig F5176 bin 23
- AAI clade 17-22 medoid: chicken MGYG000313474
- AAI clade 17-23 medoid: 3300027850 56
- AAI clade 17-24 medoid: human MGYG000000362
- AAI clade 17-25 medoid: human MGYG000001987
- AAI clade 17-26 medoid: pig F4890 bin 34
- AAI clade 17-27 medoid: pig MGYG000302222
- AAI clade 17-28 medoid: pig MGYG000303124
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

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