AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
    • AAI clade 17-1 medoid: human MGYG000003895
    • AAI clade 17-2 medoid: human MGYG000000392
    • AAI clade 17-3 medoid: human MGYG000000646
    • AAI clade 17-4 medoid: chicken MGYG000313438
    • AAI clade 17-5 medoid: human MGYG000004472
    • AAI clade 17-6 medoid: human MGYG000001984
      • AAI clade 17-6-1 medoid: pig QHF6 unmapped bin 134
      • AAI clade 17-6-2 medoid: pig S64110B bin 16
      • AAI clade 17-6-3 medoid: human MGYG000003555
      • AAI clade 17-6-4 medoid: human MGYG000001984
      • AAI clade 17-6-5 medoid: chicken GCA 019116815 1
      • AAI clade 17-6-6 medoid: chicken MGYG000310949
      • AAI clade 17-6-7 medoid: pig QHF6 unmapped bin 75
      • AAI clade 17-6-8 medoid: ruminant GCA 015066445 1
      • AAI clade 17-6-9 medoid: human MGYG000000457
      • AAI clade 17-6-10 medoid: pig QHF6 unmapped bin 415
      • AAI clade 17-6-11 medoid: human MGYG000000932
      • AAI clade 17-6-12 medoid: human MGYG000000935
      • AAI clade 17-6-13 medoid: human MGYG000003955
      • AAI clade 17-6-14 medoid: human MGYG000001860
      • AAI clade 17-6-15 medoid: human MGYG000003243
      • AAI clade 17-6-16 medoid: pig MGYG000302800
      • AAI clade 17-6-17 medoid: human MGYG000003947
      • AAI clade 17-6-18 medoid: pig BL unmapped bin 101
      • AAI clade 17-6-19 medoid: pig BL unmapped bin 145
      • AAI clade 17-6-20 medoid: ruminant GCA 015065935 1
      • AAI clade 17-6-21 medoid: pig BL unmapped bin 313
      • AAI clade 17-6-22 medoid: pig BL unmapped bin 320
      • AAI clade 17-6-23 medoid: pig BL unmapped bin 80
      • AAI clade 17-6-24 medoid: pig Boar s14 bin 45
      • AAI clade 17-6-25 medoid: pig F4984 bin 6
      • AAI clade 17-6-26 medoid: pig F4988 bin 50
      • AAI clade 17-6-27 medoid: pig GCA 946405245 1
      • AAI clade 17-6-28 medoid: ruminant GCA 015066005 1
      • AAI clade 17-6-29 medoid: pig QHF6 unmapped bin 309
      • AAI clade 17-6-30 medoid: pig QHF6 unmapped bin 339
      • AAI clade 17-6-31 medoid: pig QHF6 unmapped bin 380
      • AAI clade 17-6-32 medoid: ruminant GCA 015065605 1
      • AAI clade 17-6-33 medoid: pig QHF6 unmapped bin 533
      • AAI clade 17-6-34 medoid: pig QHF6 unmapped bin 630
      • AAI clade 17-6-35 medoid: ruminant GCA 015065875 1
      • AAI clade 17-6-36 medoid: ruminant GCA 015065645 1
      • AAI clade 17-6-37 medoid: ruminant GCA 015065925 1
      • AAI clade 17-6-38 medoid: ruminant GCA 015066085 1
        1 dataset: ruminant GCA 015066085 1 (AAI: 100.0%)
      • AAI clade 17-6-39 medoid: ruminant GCA 015066295 1
    • AAI clade 17-7 medoid: pig MGYG000300534
    • AAI clade 17-8 medoid: pig F5018 bin 47
    • AAI clade 17-9 medoid: chicken GCA 018710915 1
    • AAI clade 17-10 medoid: human MGYG000004807
    • AAI clade 17-11 medoid: human MGYG000003428
    • AAI clade 17-12 medoid: human MGYG000004779
    • AAI clade 17-13 medoid: ruminant GCA 015063485 1
    • AAI clade 17-14 medoid: pig Duroc SH FCR LM3 bin 14
    • AAI clade 17-15 medoid: pig MGYG000302171
    • AAI clade 17-16 medoid: pig Boar s14 bin 37
    • AAI clade 17-17 medoid: wastewater GEMS 3300028568 30
    • AAI clade 17-18 medoid: human MGYG000001569
    • AAI clade 17-19 medoid: human MGYG000003456
    • AAI clade 17-20 medoid: human MGYG000003844
    • AAI clade 17-21 medoid: pig F5176 bin 23
    • AAI clade 17-22 medoid: chicken MGYG000313474
    • AAI clade 17-23 medoid: 3300027850 56
    • AAI clade 17-24 medoid: human MGYG000000362
    • AAI clade 17-25 medoid: human MGYG000001987
    • AAI clade 17-26 medoid: pig F4890 bin 34
    • AAI clade 17-27 medoid: pig MGYG000302222
    • AAI clade 17-28 medoid: pig MGYG000303124
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566