AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 17-1
medoid: human MGYG000003895
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AAI clade 17-2
medoid: human MGYG000000392
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AAI clade 17-3
medoid: human MGYG000000646
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AAI clade 17-4
medoid: chicken MGYG000313438
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AAI clade 17-5
medoid: human MGYG000004472
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AAI clade 17-5-1
medoid: pig MGYG000302116
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AAI clade 17-5-2
medoid: human MGYG000004472
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AAI clade 17-5-3
medoid: human MGYG000000366
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AAI clade 17-5-4
medoid: human MGYG000004081
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AAI clade 17-5-5
medoid: human MGYG000003465
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AAI clade 17-5-6
medoid: ruminant GCA 015063425 1
4 datasets: human MGYG000000615 (AAI: 52.34%), human MGYG000003529 (AAI: 60.64%), ruminant GCA 015063425 1 (AAI: 100.0%), and ruminant GCA 015064945 1 (AAI: 50.31%)
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AAI clade 17-5-7
medoid: human MGYG000002913
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AAI clade 17-5-8
medoid: human MGYG000004108
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AAI clade 17-5-9
medoid: human MGYG000001913
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AAI clade 17-5-10
medoid: human MGYG000003839
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AAI clade 17-5-11
medoid: human MGYG000003979
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AAI clade 17-5-12
medoid: pig BL unmapped bin 141
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AAI clade 17-5-13
medoid: pig BL unmapped bin 369
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AAI clade 17-5-14
medoid: pig QHF6 unmapped bin 338
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AAI clade 17-5-15
medoid: pig S46608B bin 19
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AAI clade 17-5-16
medoid: pig Tibetan s1400 30F bin 16
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AAI clade 17-5-17
medoid: ruminant GCA 015064635 1
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AAI clade 17-5-18
medoid: ruminant GCA 015065045 1
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AAI clade 17-5-19
medoid: wastewater GEMS 3300025609 27
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AAI clade 17-5-1
medoid: pig MGYG000302116
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AAI clade 17-6
medoid: human MGYG000001984
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AAI clade 17-7
medoid: pig MGYG000300534
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AAI clade 17-8
medoid: pig F5018 bin 47
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AAI clade 17-9
medoid: chicken GCA 018710915 1
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AAI clade 17-10
medoid: human MGYG000004807
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AAI clade 17-11
medoid: human MGYG000003428
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AAI clade 17-12
medoid: human MGYG000004779
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AAI clade 17-13
medoid: ruminant GCA 015063485 1
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AAI clade 17-14
medoid: pig Duroc SH FCR LM3 bin 14
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AAI clade 17-15
medoid: pig MGYG000302171
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AAI clade 17-16
medoid: pig Boar s14 bin 37
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AAI clade 17-17
medoid: wastewater GEMS 3300028568 30
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AAI clade 17-18
medoid: human MGYG000001569
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AAI clade 17-19
medoid: human MGYG000003456
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AAI clade 17-20
medoid: human MGYG000003844
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AAI clade 17-21
medoid: pig F5176 bin 23
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AAI clade 17-22
medoid: chicken MGYG000313474
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AAI clade 17-23
medoid: 3300027850 56
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AAI clade 17-24
medoid: human MGYG000000362
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AAI clade 17-25
medoid: human MGYG000001987
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AAI clade 17-26
medoid: pig F4890 bin 34
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AAI clade 17-27
medoid: pig MGYG000302222
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AAI clade 17-28
medoid: pig MGYG000303124
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AAI clade 17-1
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566