AAI clade 17-4-11 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
- AAI clade 17-1 medoid: human MGYG000003895
- AAI clade 17-2 medoid: human MGYG000000392
- AAI clade 17-3 medoid: human MGYG000000646
- AAI clade 17-4 medoid: chicken MGYG000313438
  - AAI clade 17-4-1 medoid: chicken MGYG000318377
  - AAI clade 17-4-2 medoid: human MGYG000000220
  - AAI clade 17-4-3 medoid: chicken MGYG000310077
  - AAI clade 17-4-4 medoid: chicken NHCFR00700 metabat2 high PE 034
  - AAI clade 17-4-5 medoid: pig MGYG000301235
  - AAI clade 17-4-6 medoid: human MGYG000004709
  - AAI clade 17-4-7 medoid: pig Duroc Low4 bin 15
  - AAI clade 17-4-8 medoid: ruminant GCA 015068445 1
  - AAI clade 17-4-9 medoid: ruminant GCA 015067365 1
  - AAI clade 17-4-10 medoid: pig GCA 016297585 1
  - AAI clade 17-4-11 medoid: pig GCA 016303065 1
    
    2 datasets: pig GCA 016303065 1 (AAI: 100.0%) and ruminant GCA 015067715 1 (AAI: 70.47%)
  - AAI clade 17-4-12 medoid: ruminant GCA 015067705 1
  - AAI clade 17-4-13 medoid: ruminant GCA 015068345 1
- AAI clade 17-5 medoid: human MGYG000004472
- AAI clade 17-6 medoid: human MGYG000001984
- AAI clade 17-7 medoid: pig MGYG000300534
- AAI clade 17-8 medoid: pig F5018 bin 47
- AAI clade 17-9 medoid: chicken GCA 018710915 1
- AAI clade 17-10 medoid: human MGYG000004807
- AAI clade 17-11 medoid: human MGYG000003428
- AAI clade 17-12 medoid: human MGYG000004779
- AAI clade 17-13 medoid: ruminant GCA 015063485 1
- AAI clade 17-14 medoid: pig Duroc SH FCR LM3 bin 14
- AAI clade 17-15 medoid: pig MGYG000302171
- AAI clade 17-16 medoid: pig Boar s14 bin 37
- AAI clade 17-17 medoid: wastewater GEMS 3300028568 30
- AAI clade 17-18 medoid: human MGYG000001569
- AAI clade 17-19 medoid: human MGYG000003456
- AAI clade 17-20 medoid: human MGYG000003844
- AAI clade 17-21 medoid: pig F5176 bin 23
- AAI clade 17-22 medoid: chicken MGYG000313474
- AAI clade 17-23 medoid: 3300027850 56
- AAI clade 17-24 medoid: human MGYG000000362
- AAI clade 17-25 medoid: human MGYG000001987
- AAI clade 17-26 medoid: pig F4890 bin 34
- AAI clade 17-27 medoid: pig MGYG000302222
- AAI clade 17-28 medoid: pig MGYG000303124
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

A collaboration between