AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 15-1
medoid: human MGYG000003770
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AAI clade 15-2
medoid: pig MGYG000302055
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AAI clade 15-3
medoid: human MGYG000002327
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AAI clade 15-4
medoid: human MGYG000004327
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AAI clade 15-5
medoid: pig MGYG000301918
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AAI clade 15-5-1
medoid: pig MGYG000301918
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AAI clade 15-5-2
medoid: human MGYG000002595
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AAI clade 15-5-2-1
medoid: human MGYG000002595
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AAI clade 15-5-2-1-1
medoid: human MGYG000002595
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AAI clade 15-5-2-1-1-1
medoid: human MGYG000002595
8 datasets: human MGYG000002595 (AAI: 100.0%), human MGYG000002724 (AAI: 82.45%), human MGYG000004412 (AAI: 83.35%), human MGYG000001733 (AAI: 83.3%), human MGYG000002612 (AAI: 92.81%), human MGYG000004092 (AAI: 70.45%), pig MGYG000301003 (AAI: 94.7%), and pig SAMEA3663010 metabat2 high PE 006 (AAI: 78.98%)
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AAI clade 15-5-2-1-1-2
medoid: human MGYG000003819
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AAI clade 15-5-2-1-1-3
medoid: pig MGYG000302081
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AAI clade 15-5-2-1-1-4
medoid: ruminant GCA 015067765 1
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AAI clade 15-5-2-1-1-1
medoid: human MGYG000002595
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AAI clade 15-5-2-1-2
medoid: human MGYG000002091
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AAI clade 15-5-2-1-1
medoid: human MGYG000002595
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AAI clade 15-5-2-2
medoid: human MGYG000004196
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AAI clade 15-5-2-1
medoid: human MGYG000002595
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AAI clade 15-5-3
medoid: human MGYG000004482
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AAI clade 15-5-1
medoid: pig MGYG000301918
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AAI clade 15-1
medoid: human MGYG000003770
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566