AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
    • AAI clade 15-1 medoid: human MGYG000003770
    • AAI clade 15-2 medoid: pig MGYG000302055
    • AAI clade 15-3 medoid: human MGYG000002327
    • AAI clade 15-4 medoid: human MGYG000004327
      • AAI clade 15-4-1 medoid: human MGYG000000368
      • AAI clade 15-4-2 medoid: pig SAMEA3663242 metabat2 high PE 022
        3 datasets: human MGYG000001166 (AAI: 74.23%), pig F4872 bin 50 (AAI: 92.36%), and pig SAMEA3663242 metabat2 high PE 022 (AAI: 100.0%)
      • AAI clade 15-4-3 medoid: human MGYG000002667
      • AAI clade 15-4-4 medoid: human MGYG000004200
      • AAI clade 15-4-5 medoid: pig MGYG000302290
      • AAI clade 15-4-6 medoid: human MGYG000001919
      • AAI clade 15-4-7 medoid: human MGYG000002716
      • AAI clade 15-4-8 medoid: pig Boar s11 bin 40
      • AAI clade 15-4-9 medoid: pig F4983 bin 2
      • AAI clade 15-4-10 medoid: pig QHF6 unmapped bin 111
      • AAI clade 15-4-11 medoid: pig QHF6 unmapped bin 369
      • AAI clade 15-4-12 medoid: pig QHF6 unmapped bin 719
    • AAI clade 15-5 medoid: pig MGYG000301918
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566