AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
    • AAI clade 15-1 medoid: human MGYG000003770
    • AAI clade 15-2 medoid: pig MGYG000302055
    • AAI clade 15-3 medoid: human MGYG000002327
      • AAI clade 15-3-1 medoid: chicken MGYG000311364
      • AAI clade 15-3-2 medoid: chicken MGYG000314525
      • AAI clade 15-3-3 medoid: chicken MGYG000316966
      • AAI clade 15-3-4 medoid: human MGYG000002057
      • AAI clade 15-3-5 medoid: human MGYG000004683
      • AAI clade 15-3-6 medoid: chicken GCA 019114405 1
      • AAI clade 15-3-7 medoid: chicken LHCFC04200 metabat2 low PE 042
      • AAI clade 15-3-8 medoid: chicken MGYG000309533
      • AAI clade 15-3-9 medoid: chicken MGYG000312139
      • AAI clade 15-3-10 medoid: human MGYG000000921
      • AAI clade 15-3-11 medoid: human MGYG000001576
      • AAI clade 15-3-12 medoid: human MGYG000001616
      • AAI clade 15-3-13 medoid: human MGYG000001983
      • AAI clade 15-3-14 medoid: human MGYG000001949
      • AAI clade 15-3-15 medoid: human MGYG000003589
        5 datasets: human MGYG000002229 (AAI: 72.93%), human MGYG000003589 (AAI: 100.0%), pig LW2 s127153 bin 52 (AAI: 71.96%), pig MGYG000300866 (AAI: 86.27%), and pig MGYG000302119 (AAI: 72.29%)
      • AAI clade 15-3-16 medoid: human MGYG000002726
      • AAI clade 15-3-17 medoid: human MGYG000002727
      • AAI clade 15-3-18 medoid: human MGYG000002964
      • AAI clade 15-3-19 medoid: pig BL unmapped bin 257
      • AAI clade 15-3-20 medoid: pig Boar s8 bin 42
      • AAI clade 15-3-21 medoid: pig MGYG000300242
      • AAI clade 15-3-22 medoid: pig MGYG000301854
      • AAI clade 15-3-23 medoid: ruminant GCA 015067995 1
      • AAI clade 15-3-24 medoid: ruminant GCA 015068025 1
    • AAI clade 15-4 medoid: human MGYG000004327
    • AAI clade 15-5 medoid: pig MGYG000301918
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566