AAI clade 14-22 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
- AAI clade 14-1 medoid: human MGYG000003699
- AAI clade 14-2 medoid: human MGYG000004591
- AAI clade 14-3 medoid: human MGYG000003653
- AAI clade 14-4 medoid: dog Snoopy p1 metabat2 high PE 009
- AAI clade 14-5 medoid: human MGYG000004288
- AAI clade 14-6 medoid: 3300027851 70
- AAI clade 14-7 medoid: human MGYG000003121
- AAI clade 14-8 medoid: human MGYG000002268
- AAI clade 14-9 medoid: human MGYG000001928
- AAI clade 14-10 medoid: ruminant GCA 015059145 1
- AAI clade 14-11 medoid: human MGYG000000134
- AAI clade 14-12 medoid: chicken MGYG000319641
- AAI clade 14-13 medoid: human MGYG000000037
- AAI clade 14-14 medoid: human MGYG000003507
- AAI clade 14-15 medoid: pig F5309 bin 12
- AAI clade 14-16 medoid: human MGYG000004545
- AAI clade 14-17 medoid: human MGYG000003292
- AAI clade 14-18 medoid: human MGYG000000686
- AAI clade 14-19 medoid: human MGYG000003568
- AAI clade 14-20 medoid: pig MGYG000302049
- AAI clade 14-21 medoid: human MGYG000000347
- AAI clade 14-22 medoid: 3300027973 12
  
  7 datasets: 2049941002 2 (AAI: 44.89%), 3300012044 11 (AAI: 45.78%), 3300020428 40 (AAI: 55.57%), 3300026279 20 (AAI: 57.99%), 3300027741 3 (AAI: 46.82%), 3300027747 10 (AAI: 75.43%), and 3300027973 12 (AAI: 100.0%)
- AAI clade 14-23 medoid: 3300020200 83
- AAI clade 14-24 medoid: 3300000227 15
- AAI clade 14-25 medoid: 3300025545 26
- AAI clade 14-26 medoid: 3300029821 40
- AAI clade 14-27 medoid: human MGYG000001403
- AAI clade 14-28 medoid: 3300027719 57
- AAI clade 14-29 medoid: 3300028569 72
- AAI clade 14-30 medoid: 3300014208 94
- AAI clade 14-31 medoid: 3300013137 178
- AAI clade 14-32 medoid: wastewater GEMS 3300025882 148
- AAI clade 14-33 medoid: ruminant GCA 015059065 1
- AAI clade 14-34 medoid: human MGYG000001421
- AAI clade 14-35 medoid: bird X103 Eurasian Blackcap maxbin2 low prob 003
- AAI clade 14-36 medoid: dog Ash p2 metabat2 high PE 029
- AAI clade 14-37 medoid: human MGYG000002779
- AAI clade 14-38 medoid: human MGYG000004488
- AAI clade 14-39 medoid: human MGYG000002950 1
- AAI clade 14-40 medoid: human MGYG000004600
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

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