AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 12-1
medoid: dog GCA 022496395 1
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AAI clade 12-2
medoid: dog GCA 022496315 1
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AAI clade 12-3
medoid: human MGYG000003125
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AAI clade 12-4
medoid: 3300007346 9
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AAI clade 12-5
medoid: 3300027760 22
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AAI clade 12-6
medoid: 3300026134 5
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AAI clade 12-7
medoid: wastewater ye ASMAG2005
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AAI clade 12-8
medoid: chicken DGYFI06202 metabat2 high PE 029
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AAI clade 12-9
medoid: chicken MGYG000312802
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AAI clade 12-10
medoid: human MGYG000003811
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AAI clade 12-11
medoid: chicken GCA 014837045 1
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AAI clade 12-12
medoid: 3300008012 19
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AAI clade 12-13
medoid: 3300027231 11
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AAI clade 12-14
medoid: 3300003375 5
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AAI clade 12-15
medoid: 3300027983 69
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AAI clade 12-16
medoid: 3300014957 3
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AAI clade 12-17
medoid: chicken GCA 014836555 1
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AAI clade 12-18
medoid: 3300027976 64
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AAI clade 12-19
medoid: wastewater GEMS 3300012990 10
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AAI clade 12-20
medoid: 3300027760 62
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AAI clade 12-21
medoid: 3300010158 20
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AAI clade 12-22
medoid: 3300027746 62
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AAI clade 12-23
medoid: 3300024356 12
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AAI clade 12-24
medoid: 3300020397 14
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AAI clade 12-25
medoid: 3300027848 89
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AAI clade 12-26
medoid: 3300025183 2
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AAI clade 12-27
medoid: 3300027415 2
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AAI clade 12-28
medoid: 3300027963 72
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AAI clade 12-29
medoid: 3300020429 15
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AAI clade 12-30
medoid: chicken MGYG000320897
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AAI clade 12-31
medoid: chicken GCA 020742595 1
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AAI clade 12-32
medoid: human MGYG000001411
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AAI clade 12-33
medoid: chicken DHCMJ07802 metabat2 low PE 015
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AAI clade 12-34
medoid: human MGYG000001408
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AAI clade 12-35
medoid: chicken GCA 020741275 1
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AAI clade 12-36
medoid: chicken GCA 019115985 1
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AAI clade 12-37
medoid: wastewater singleton GCA 016710385 1 ASM1671038v1 genomic
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AAI clade 12-37-1
medoid: chicken GCA 019116945 1
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AAI clade 12-37-2
medoid: human MGYG000001486
1 dataset: human MGYG000001486 (AAI: 100.0%)
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AAI clade 12-37-3
medoid: pig MGYG000301512
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AAI clade 12-37-4
medoid: wastewater GEMS 3300026299 19
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AAI clade 12-37-5
medoid: wastewater GEMS 3300026286 9
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AAI clade 12-37-6
medoid: wastewater GEMS 3300026289 17
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AAI clade 12-37-7
medoid: wastewater singleton GCA 016699675 1 ASM1669967v1 genomic
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AAI clade 12-37-8
medoid: wastewater singleton GCA 016704565 1 ASM1670456v1 genomic
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AAI clade 12-37-9
medoid: wastewater singleton GCA 016710385 1 ASM1671038v1 genomic
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AAI clade 12-37-10
medoid: wastewater singleton GCA 016711095 1 ASM1671109v1 genomic
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AAI clade 12-37-11
medoid: wastewater ye ASMAG1748
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AAI clade 12-37-12
medoid: wastewater singleton GCA 016715285 1 ASM1671528v1 genomic
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AAI clade 12-37-13
medoid: wastewater singleton GCA 016716625 1 ASM1671662v1 genomic
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AAI clade 12-37-14
medoid: wastewater singleton GCA 016717165 1 ASM1671716v1 genomic
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AAI clade 12-37-15
medoid: wastewater ye ASMAG1193
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AAI clade 12-37-16
medoid: wastewater ye ASMAG1202
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AAI clade 12-37-17
medoid: wastewater ye ASMAG1720
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AAI clade 12-37-1
medoid: chicken GCA 019116945 1
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AAI clade 12-38
medoid: chicken MGYG000308330
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AAI clade 12-39
medoid: chicken GCA 020744015 1
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AAI clade 12-40
medoid: human MGYG000002888
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AAI clade 12-41
medoid: human MGYG000000112
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AAI clade 12-42
medoid: human MGYG000002897
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AAI clade 12-43
medoid: human MGYG000003113
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AAI clade 12-44
medoid: human MGYG000000642
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AAI clade 12-45
medoid: human MGYG000004883
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AAI clade 12-46
medoid: human MGYG000001287
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AAI clade 12-47
medoid: human MGYG000003800
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AAI clade 12-1
medoid: dog GCA 022496395 1
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566