AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
    • AAI clade 11-1 medoid: pig GCA 946405745 1
    • AAI clade 11-2 medoid: human MGYG000002486
    • AAI clade 11-3 medoid: human MGYG000003114
    • AAI clade 11-4 medoid: pig MGYG000302445
    • AAI clade 11-5 medoid: dog SAMEA103957793 metabat2 high PE 001
    • AAI clade 11-6 medoid: chicken MHCFR05601 metabat2 low PE 003
    • AAI clade 11-7 medoid: pig QHF6 unmapped bin 170
      • AAI clade 11-7-1 medoid: human MGYG000002096
      • AAI clade 11-7-2 medoid: human MGYG000002204
      • AAI clade 11-7-3 medoid: human MGYG000000939
      • AAI clade 11-7-4 medoid: chicken GCA 019117635 1
      • AAI clade 11-7-5 medoid: chicken MGYG000307682
      • AAI clade 11-7-6 medoid: human MGYG000001675
      • AAI clade 11-7-7 medoid: pig F5348 bin 33
      • AAI clade 11-7-8 medoid: human MGYG000002665
      • AAI clade 11-7-9 medoid: human MGYG000000730
      • AAI clade 11-7-10 medoid: human MGYG000004671
      • AAI clade 11-7-11 medoid: human MGYG000001665
      • AAI clade 11-7-12 medoid: human MGYG000002193
      • AAI clade 11-7-13 medoid: 3300014656 9
        4 datasets: 3300000227 4 (AAI: 57.52%), 3300014656 9 (AAI: 100.0%), wastewater GEMS 3300025859 6 (AAI: 65.93%), and wastewater GEMS 3300025867 15 (AAI: 59.77%)
      • AAI clade 11-7-14 medoid: 3300000230 29
      • AAI clade 11-7-15 medoid: wastewater GEMS 3300025605 6
      • AAI clade 11-7-16 medoid: 3300000504 9
      • AAI clade 11-7-17 medoid: 3300002242 56
      • AAI clade 11-7-18 medoid: 3300003079 1
      • AAI clade 11-7-19 medoid: 3300027555 17
      • AAI clade 11-7-20 medoid: wastewater GEMS 3300014832 10
      • AAI clade 11-7-21 medoid: 3300013123 117
      • AAI clade 11-7-22 medoid: wastewater GEMS 3300025471 35
      • AAI clade 11-7-23 medoid: 3300013131 115
      • AAI clade 11-7-24 medoid: 3300013137 144
      • AAI clade 11-7-25 medoid: human MGYG000002411
      • AAI clade 11-7-26 medoid: 3300027777 60
      • AAI clade 11-7-27 medoid: 3300017401 6
      • AAI clade 11-7-28 medoid: 3300017451 17
      • AAI clade 11-7-29 medoid: 3300021518 10
      • AAI clade 11-7-30 medoid: 3300020578 42
      • AAI clade 11-7-31 medoid: wastewater ye ASMAG1718
      • AAI clade 11-7-32 medoid: 3300026488 14
      • AAI clade 11-7-33 medoid: 3300027893 95
      • AAI clade 11-7-34 medoid: human MGYG000000922
      • AAI clade 11-7-35 medoid: 3300028602 75
      • AAI clade 11-7-36 medoid: 3300029902 12
      • AAI clade 11-7-37 medoid: human MGYG000000807
      • AAI clade 11-7-38 medoid: pig MGYG000301916
      • AAI clade 11-7-39 medoid: pig BL unmapped bin 83
      • AAI clade 11-7-40 medoid: ruminant X430 Giraffe metabat2 high PE 002
      • AAI clade 11-7-41 medoid: wastewater GEMS 3300001095 28
      • AAI clade 11-7-42 medoid: wastewater GEMS 3300001096 38
      • AAI clade 11-7-43 medoid: wastewater GEMS 3300009772 43
      • AAI clade 11-7-44 medoid: wastewater ye ASMAG139
      • AAI clade 11-7-45 medoid: wastewater ye ASMAG1583
    • AAI clade 11-8 medoid: chicken DSLFR04102 metabat2 low PE 033
    • AAI clade 11-9 medoid: pig LW1 s150971 bin 26
    • AAI clade 11-10 medoid: chicken MGYG000315728
    • AAI clade 11-11 medoid: human MGYG000002887
    • AAI clade 11-12 medoid: pig F5110 bin 54
    • AAI clade 11-13 medoid: human MGYG000001535
    • AAI clade 11-14 medoid: 3300024353 70
    • AAI clade 11-15 medoid: human MGYG000003150
    • AAI clade 11-16 medoid: 3300013132 34
    • AAI clade 11-17 medoid: human MGYG000002821
    • AAI clade 11-18 medoid: human MGYG000002901
    • AAI clade 11-19 medoid: human MGYG000001350
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566