AAI clade 11-13-1-1 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: human MGYG000000946
AAI clade 2 medoid: human MGYG000000019
AAI clade 3 medoid: human MGYG000003370
AAI clade 4 medoid: 3300027323 37
AAI clade 5 medoid: human MGYG000004185
AAI clade 6 medoid: human MGYG000001010
AAI clade 7 medoid: wastewater GEMS 3300025861 51
AAI clade 8 medoid: human MGYG000002603
AAI clade 9 medoid: 3300024953 8
AAI clade 10 medoid: 3300017423 5
AAI clade 11 medoid: pig GCA 946405745 1
- AAI clade 11-1 medoid: pig GCA 946405745 1
- AAI clade 11-2 medoid: human MGYG000002486
- AAI clade 11-3 medoid: human MGYG000003114
- AAI clade 11-4 medoid: pig MGYG000302445
- AAI clade 11-5 medoid: dog SAMEA103957793 metabat2 high PE 001
- AAI clade 11-6 medoid: chicken MHCFR05601 metabat2 low PE 003
- AAI clade 11-7 medoid: pig QHF6 unmapped bin 170
- AAI clade 11-8 medoid: chicken DSLFR04102 metabat2 low PE 033
- AAI clade 11-9 medoid: pig LW1 s150971 bin 26
- AAI clade 11-10 medoid: chicken MGYG000315728
- AAI clade 11-11 medoid: human MGYG000002887
- AAI clade 11-12 medoid: pig F5110 bin 54
- AAI clade 11-13 medoid: human MGYG000001535
  - AAI clade 11-13-1 medoid: human MGYG000001535
    
    AAI clade 11-13-1-1 medoid: 3300000227 40
    
    1 dataset: 3300000227 40 (AAI: 100.0%)
    
    AAI clade 11-13-1-2 medoid: 3300017937 5
    
    AAI clade 11-13-1-3 medoid: 3300018411 5
    
    AAI clade 11-13-1-4 medoid: human MGYG000003402
    
    AAI clade 11-13-1-5 medoid: human MGYG000001404
    
    AAI clade 11-13-1-6 medoid: human MGYG000001436
    
    AAI clade 11-13-1-7 medoid: human MGYG000001451
    
    AAI clade 11-13-1-8 medoid: human MGYG000001488
    
    AAI clade 11-13-1-9 medoid: human MGYG000001491
    
    AAI clade 11-13-1-10 medoid: human MGYG000001510
    
    AAI clade 11-13-1-11 medoid: human MGYG000001514
    
    AAI clade 11-13-1-12 medoid: human MGYG000001518
    
    AAI clade 11-13-1-13 medoid: human MGYG000001535
    
    AAI clade 11-13-1-14 medoid: human MGYG000001542
    
    AAI clade 11-13-1-15 medoid: human MGYG000001548
    
    AAI clade 11-13-1-16 medoid: human MGYG000002314
    
    AAI clade 11-13-1-17 medoid: human MGYG000002407
    
    AAI clade 11-13-1-18 medoid: human MGYG000002817
  - AAI clade 11-13-2 medoid: 3300017453 36
  - AAI clade 11-13-3 medoid: bird GCA 009870785 1
- AAI clade 11-14 medoid: 3300024353 70
- AAI clade 11-15 medoid: human MGYG000003150
- AAI clade 11-16 medoid: 3300013132 34
- AAI clade 11-17 medoid: human MGYG000002821
- AAI clade 11-18 medoid: human MGYG000002901
- AAI clade 11-19 medoid: human MGYG000001350
AAI clade 12 medoid: 3300006192 20
AAI clade 13 medoid: pig LW1 s150947 bin 23
AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
AAI clade 15 medoid: pig MGYG000302081
AAI clade 16 medoid: human MGYG000000545
AAI clade 17 medoid: human MGYG000003895
AAI clade 18 medoid: chicken MGYG000313561
AAI clade 19 medoid: 3300024912 1
AAI clade 20 medoid: human MGYG000002619
AAI clade 21 medoid: human MGYG000002428
AAI clade 22 medoid: 3300027805 13
AAI clade 23 medoid: chicken MGYG000314833
AAI clade 24 medoid: wastewater GEMS 3300027794 31
AAI clade 25 medoid: human MGYG000004406
AAI clade 26 medoid: pig MGYG000301788
AAI clade 27 medoid: 3300027834 52
AAI clade 28 medoid: 3300020389 13
AAI clade 29 medoid: 3300027835 270
AAI clade 30 medoid: 3300013004 97
AAI clade 31 medoid: 3300025065 6
AAI clade 32 medoid: human MGYG000004800
AAI clade 33 medoid: ruminant GCA 015060255 1
AAI clade 34 medoid: chicken GCA 019115885 1
AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
AAI clade 36 medoid: human MGYG000000998
AAI clade 37 medoid: 3300012919 27
AAI clade 38 medoid: 3300027851 42
AAI clade 39 medoid: wastewater ye ASMAG566

AAI-based medoid clustering

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