AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 11-1
medoid: pig GCA 946405745 1
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AAI clade 11-1-1
medoid: pig GCA 946405745 1
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AAI clade 11-1-1-1
medoid: pig GCA 946405745 1
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AAI clade 11-1-1-1-1
medoid: pig GCA 946405745 1
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AAI clade 11-1-1-1-2
medoid: human MGYG000002377
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AAI clade 11-1-1-1-3
medoid: pig BL unmapped bin 291
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AAI clade 11-1-1-1-4
medoid: 3300000227 21
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AAI clade 11-1-1-1-5
medoid: wastewater ye ASMAG1121
4 datasets: 3300009702 51 (AAI: 44.59%), 3300009702 59 (AAI: 39.75%), wastewater ye ASMAG1043 (AAI: 41.71%), and wastewater ye ASMAG1121 (AAI: 100.0%)
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AAI clade 11-1-1-1-6
medoid: 3300021376 78
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AAI clade 11-1-1-1-7
medoid: 3300027896 132
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AAI clade 11-1-1-1-8
medoid: chicken GCA 019120235 1
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AAI clade 11-1-1-1-9
medoid: chicken MGYG000308692
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AAI clade 11-1-1-1-10
medoid: human MGYG000000115
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AAI clade 11-1-1-1-11
medoid: ruminant GCA 015068615 1
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AAI clade 11-1-1-1-12
medoid: wastewater GEMS 3300025748 62
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AAI clade 11-1-1-1-13
medoid: wastewater ye ASMAG205
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AAI clade 11-1-1-1-1
medoid: pig GCA 946405745 1
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AAI clade 11-1-1-2
medoid: wastewater GEMS 3300028570 31
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AAI clade 11-1-1-3
medoid: wastewater ye ASMAG1884
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AAI clade 11-1-1-4
medoid: human MGYG000001276
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AAI clade 11-1-1-5
medoid: wastewater GEMS 3300028622 26
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AAI clade 11-1-1-6
medoid: wastewater GEMS 3300001095 19
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AAI clade 11-1-1-7
medoid: wastewater GEMS 3300025855 140
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AAI clade 11-1-1-8
medoid: 3300027896 119
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AAI clade 11-1-1-9
medoid: human MGYG000003801
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AAI clade 11-1-1-10
medoid: wastewater ye ASMAG1304
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AAI clade 11-1-1-1
medoid: pig GCA 946405745 1
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AAI clade 11-1-2
medoid: cow GCA 026651005 1
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AAI clade 11-1-3
medoid: human MGYG000001309
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AAI clade 11-1-4
medoid: human MGYG000003550
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AAI clade 11-1-5
medoid: wastewater ye ASMAG368
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AAI clade 11-1-1
medoid: pig GCA 946405745 1
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AAI clade 11-2
medoid: human MGYG000002486
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AAI clade 11-3
medoid: human MGYG000003114
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AAI clade 11-4
medoid: pig MGYG000302445
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AAI clade 11-5
medoid: dog SAMEA103957793 metabat2 high PE 001
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AAI clade 11-6
medoid: chicken MHCFR05601 metabat2 low PE 003
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AAI clade 11-7
medoid: pig QHF6 unmapped bin 170
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AAI clade 11-8
medoid: chicken DSLFR04102 metabat2 low PE 033
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AAI clade 11-9
medoid: pig LW1 s150971 bin 26
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AAI clade 11-10
medoid: chicken MGYG000315728
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AAI clade 11-11
medoid: human MGYG000002887
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AAI clade 11-12
medoid: pig F5110 bin 54
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AAI clade 11-13
medoid: human MGYG000001535
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AAI clade 11-14
medoid: 3300024353 70
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AAI clade 11-15
medoid: human MGYG000003150
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AAI clade 11-16
medoid: 3300013132 34
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AAI clade 11-17
medoid: human MGYG000002821
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AAI clade 11-18
medoid: human MGYG000002901
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AAI clade 11-19
medoid: human MGYG000001350
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AAI clade 11-1
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566