AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: human MGYG000000946
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AAI clade 1-1
medoid: human MGYG000000946
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AAI clade 1-2
medoid: human MGYG000003624
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AAI clade 1-2-1
medoid: human MGYG000002782
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AAI clade 1-2-2
medoid: human MGYG000002914
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AAI clade 1-2-3
medoid: human MGYG000004567
8 datasets: chicken DGYFR06201 metabat2 high PE 046 (AAI: 81.98%), chicken GCA 019119005 1 (AAI: 72.99%), chicken GCA 020742575 1 (AAI: 73.63%), chicken GCA 019115965 1 (AAI: 81.37%), chicken GCA 019116265 1 (AAI: 81.67%), chicken GCA 019116525 1 (AAI: 71.45%), chicken GCA 019117265 1 (AAI: 72.28%), and human MGYG000004567 (AAI: 100.0%)
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AAI clade 1-2-4
medoid: chicken GCA 018714895 1
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AAI clade 1-2-5
medoid: dog Trix p1 metabat2 low PE 013
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AAI clade 1-2-6
medoid: human MGYG000000535
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AAI clade 1-2-7
medoid: human MGYG000004737
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AAI clade 1-2-8
medoid: chicken GCA 019115505 1
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AAI clade 1-2-9
medoid: human MGYG000003298
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AAI clade 1-2-10
medoid: human MGYG000003373
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AAI clade 1-2-11
medoid: human MGYG000003624
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AAI clade 1-2-1
medoid: human MGYG000002782
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AAI clade 1-3
medoid: human MGYG000000907
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AAI clade 1-4
medoid: human MGYG000000643
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AAI clade 1-5
medoid: human MGYG000002074
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AAI clade 1-6
medoid: 3300023176 42
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AAI clade 1-7
medoid: human MGYG000001154
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AAI clade 1-1
medoid: human MGYG000000946
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AAI clade 2
medoid: human MGYG000000019
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AAI clade 3
medoid: human MGYG000003370
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AAI clade 4
medoid: 3300027323 37
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AAI clade 5
medoid: human MGYG000004185
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AAI clade 6
medoid: human MGYG000001010
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AAI clade 7
medoid: wastewater GEMS 3300025861 51
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AAI clade 8
medoid: human MGYG000002603
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AAI clade 9
medoid: 3300024953 8
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AAI clade 10
medoid: 3300017423 5
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AAI clade 11
medoid: pig GCA 946405745 1
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AAI clade 12
medoid: 3300006192 20
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AAI clade 13
medoid: pig LW1 s150947 bin 23
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AAI clade 14
medoid: dog Snoopy p1 metabat2 high PE 009
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AAI clade 15
medoid: pig MGYG000302081
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AAI clade 16
medoid: human MGYG000000545
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AAI clade 17
medoid: human MGYG000003895
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AAI clade 18
medoid: chicken MGYG000313561
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AAI clade 19
medoid: 3300024912 1
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AAI clade 20
medoid: human MGYG000002619
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AAI clade 21
medoid: human MGYG000002428
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AAI clade 22
medoid: 3300027805 13
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AAI clade 23
medoid: chicken MGYG000314833
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AAI clade 24
medoid: wastewater GEMS 3300027794 31
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AAI clade 25
medoid: human MGYG000004406
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AAI clade 26
medoid: pig MGYG000301788
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AAI clade 27
medoid: 3300027834 52
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AAI clade 28
medoid: 3300020389 13
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AAI clade 29
medoid: 3300027835 270
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AAI clade 30
medoid: 3300013004 97
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AAI clade 31
medoid: 3300025065 6
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AAI clade 32
medoid: human MGYG000004800
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AAI clade 33
medoid: ruminant GCA 015060255 1
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AAI clade 34
medoid: chicken GCA 019115885 1
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AAI clade 35
medoid: pig SAMEA3663026 metabat2 high PE 017
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AAI clade 36
medoid: human MGYG000000998
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AAI clade 37
medoid: 3300012919 27
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AAI clade 38
medoid: 3300027851 42
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AAI clade 39
medoid: wastewater ye ASMAG566