Sacchariniichlamydia saccharinaeTs


Citation

Formal styling
Sacchariniichlamydia saccharinaeTs corrig. Davison, Hurst, 2023
Proposed in
Davison, Hurst, 2023
Corrigendum
In SeqCode Registry from “Sacchlamyda saccharinae” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:bsk8pkm4 (validated)
Cannonical URL
https://seqco.de/i:31324

Nomenclature

Rank
Species
Syllabication
sac.cha.ri'nae
Etymology
N.L. gen. n. saccharinae, of Saccharina seaweed
Nomenclatural type
NCBI Assembly: GCA_030408505.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A species of Rhabdochlamydiaceae bacteria. The type species was extracted through a metagenomic assembly pipeline applied to the seaweed Saccharina japonica (accession SRR2043156). Species status was established based on sharing <95% Average Nucleotide Identity (ANI) with any other Rhabdochlamydiaceae.

Classification
Bacteria » Chlamydiota » Chlamydiia » Parachlamydiales » “Rhabdochlamydiaceae” » Sacchariniichlamydia » Sacchariniichlamydia saccharinaeTs
Parent
Sacchariniichlamydia

Genomics

Accession
NCBI Assembly:GCA_030408505.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.05%
  • Contamination: 0.9%
  • Quality: 86.55
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 96.0%)
  • tRNAs for 20 amino acids
Sequencing depth
26.0 ×
Source
Other features
  • G+C Content: 45.53%
  • Coding Density: 93.42%
  • Codon Table: 11
  • N50: 1,168,685 bp
  • Contigs: 4
  • Largest Contig: 1,168,685bp
  • Assembly Length: 1,734,283 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination was assessed with CheckM.

Anvi'o 7 was used to identify the 16S rRNA, which is 1550 bp, and the 23S rRNA which is 2917 bp. Percent completeness was taken by comparision to the lengths of the nearest hits. Sequences are attached.tRNAs were detected with tRNAScan-SE through Anvi'o 7. It detected 37 total covering 20 amino acids.
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Davison, Helen Rebecca 10 months ago
Submitted by
Davison, Helen Rebecca 3 months ago
Curators
Endorsed by
Palmer, Marike 25 days ago
Validated by
Palmer, Marike 25 days ago

Publications
1

Citation Title
Davison, Hurst, 2023, Systematic and Applied Microbiology Hidden from plain sight: Novel Simkaniaceae and Rhabdochlamydiaceae diversity emerging from screening genomic and metagenomic data
Proposed this name



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