Sacchariniichlamydia saccharinae^Ts

Citation

Formal styling

Sacchariniichlamydia saccharinae^Ts corrig. Davison, Hurst, 2023

Effective publication

Davison, Hurst, 2023

Corrigendum

In SeqCode Registry from “Sacchlamyda saccharinae” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:bsk8pkm4 (validated)

Cannonical URL

https://seqco.de/i:31324

Nomenclature

Rank

Species

Syllabication

sac.cha.ri'nae

Etymology

N.L. gen. n. saccharinae, of Saccharina seaweed

Nomenclatural type

NCBI Assembly: GCA_030408505.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species of Rhabdochlamydiaceae bacteria. The type species was extracted through a metagenomic assembly pipeline applied to the seaweed Saccharina japonica (accession SRR2043156). Species status was established based on sharing <95% Average Nucleotide Identity (ANI) with any other Rhabdochlamydiaceae.

Classification

Bacteria » Chlamydiota » Chlamydiia » Parachlamydiales » “Rhabdochlamydiaceae” » Sacchariniichlamydia » Sacchariniichlamydia saccharinae^Ts

Parent

Sacchariniichlamydia

Genomics

Accession

NCBI Assembly:GCA_030408505.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.05%
• Contamination: 0.9%
• Quality: 86.55

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 96.0%)
• tRNAs for 20 amino acids

Sequencing depth

26.0 ×

Source

• SRA: SRR2043156

Other features

• G+C Content: 45.53%
• Coding Density: 93.42%
• Codon Table: 11
• N50: 1,168,685 bp
• Contigs: 4
• Largest Contig: 1,168,685 bp
• Assembly Length: 1,734,283 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination was assessed with CheckM.

Anvi'o 7 was used to identify the 16S rRNA, which is 1550 bp, and the 23S rRNA which is 2917 bp. Percent completeness was taken by comparision to the lengths of the nearest hits. Sequences are attached.

tRNAs were detected with tRNAScan-SE through Anvi'o 7. It detected 37 total covering 20 amino acids.

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_030408505.1

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Davison, Helen Rebecca 12 months ago

Submitted by

Davison, Helen Rebecca 5 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 3 months ago

Validated by

Palmer, Marike 3 months ago