JSON

Genome sc|0000472

Name

Sacchariniichlamydia saccharinaeTs

Database

NCBI Assembly

Accession

GCA_030408505.1

Genomics

Accession
NCBI Assembly:GCA_030408505.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.05%
  • Contamination: 0.9%
  • Quality: 86.55
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 96.0%)
  • tRNAs for 20 amino acids
Sequencing depth
26.0 ×
Source
Other features
  • G+C Content: 45.53%
  • Coding Density: 93.42%
  • Codon Table: 11
  • N50: 1,168,685 bp
  • Contigs: 4
  • Largest Contig: 1,168,685 bp
  • Assembly Length: 1,734,283 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination was assessed with CheckM.

Anvi'o 7 was used to identify the 16S rRNA, which is 1550 bp, and the 23S rRNA which is 2917 bp. Percent completeness was taken by comparision to the lengths of the nearest hits. Sequences are attached.tRNAs were detected with tRNAScan-SE through Anvi'o 7. It detected 37 total covering 20 amino acids.
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Geo Loc Name: China: Dalian
Environment
Env Material: marine water
Other
Not detected
Package
Ncbi Submission Package: MIGS.eu.5.0
Biosamplemodel: MIGS.eu
All retrieved samples
Metadata retrieved 4 months ago


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