Aldehydirespirator catecholifindens^Ts

Citation

Formal styling

Aldehydirespirator catecholifindens^Ts Nguyen et al., 2023

Effective publication

Nguyen et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:v1sky3wb (validated)

Cannonical URL

https://seqco.de/i:24017

Nomenclature

Rank

Species

Syllabication

ca.te.cho.li.fin'dens

Etymology

N.L. neut. n. catecholum, catechol; L. v. findo, to split; N.L. masc. part. adj. catecholifindens, one with the ability to split catechols

Nomenclatural type

NCBI Assembly: GCA_028283245.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Sponge-derived acidimicrobiial species with the predicted capability to degrade catechol. Its electron transport chain may also rely on acetaldehyde reduction for menaquinol/menaquinone cycling 

Classification

Bacteria » Actinomycetota » Acidimicrobiia » Acidimicrobiales » Aldehydirespiratoraceae » Aldehydirespirator » Aldehydirespirator catecholifindens^Ts

Parent

Aldehydirespirator

Genomics

Accession

NCBI Assembly:GCA_028283245.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.31%
• Contamination: 0.85%
• Quality: 88.06

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 80.0%)
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

15.0 ×

Source

• BioSample: SAMN31047463

Other features

• G+C Content: 57.59%
• Coding Density: 91.84%
• Codon Table: 11
• N50: 36,208 bp
• Contigs: 104
• Largest Contig: 124,589 bp
• Assembly Length: 2,593,093 bp
• Ambiguous Assembly Fraction: 0.0016%

Submitter comments

Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

JAPYNU000000000, which is the proposed type genome of this species has an incomplete 16S rRNA genome. We have not been able to assemble a better 16S rRNA gene sequence for this species, including the three other genomes we have for the species (see linked publication for details).

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_028283245.1
• Global Biodiversity Information Facility (GBIF)

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified 8 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Thomas, Torsten over 1 year ago

Submitted by

Thomas, Torsten 8 months ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike 8 months ago

Validated by

Palmer, Marike 8 months ago