AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: asm GCA 900155255 1
  • AAI clade 2 medoid: asm GCA 003225555 1
  • AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
  • AAI clade 4 medoid: miga BA16A LX33 339
  • AAI clade 5 medoid: asm GCA 002344625 1
  • AAI clade 6 medoid: miga ZQ19A BG 240
    • AAI clade 6-1 medoid: asm GCA 003854975 1
    • AAI clade 6-2 medoid: miga ZQ19A BG 240
    • AAI clade 6-3 medoid: gb PMZO00000000
    • AAI clade 6-4 medoid: asm GCA 002426145 1
    • AAI clade 6-5 medoid: gb LLZO00000000
    • AAI clade 6-6 medoid: asm GCA 001802995 1
    • AAI clade 6-7 medoid: asm GCA 900000315 1
      • AAI clade 6-7-1 medoid: gb MWSV00000000
      • AAI clade 6-7-2 medoid: asm GCA 002898075 1
      • AAI clade 6-7-3 medoid: asm GCA 001873185 1
      • AAI clade 6-7-4 medoid: asm GCA 002307295 1
        1 dataset: asm GCA 002307295 1 (AAI: 100.0%)
      • AAI clade 6-7-5 medoid: asm GCA 002435365 1
      • AAI clade 6-7-6 medoid: asm GCA 001802895 1
      • AAI clade 6-7-7 medoid: asm GCA 900000315 1
      • AAI clade 6-7-8 medoid: asm GCA 003644835 1
      • AAI clade 6-7-9 medoid: gb PLNZ00000000
      • AAI clade 6-7-10 medoid: gb MHAD00000000
      • AAI clade 6-7-11 medoid: gb MWSU00000000
      • AAI clade 6-7-12 medoid: asm GCA 002784005 1
      • AAI clade 6-7-13 medoid: asm GCA 002790365 1
    • AAI clade 6-8 medoid: gb PMJR00000000
    • AAI clade 6-9 medoid: asm GCA 002737625 1
    • AAI clade 6-10 medoid: asm GCA 001769385 1
    • AAI clade 6-11 medoid: asm GCA 002049825 1
    • AAI clade 6-12 medoid: asm GCA 001603415 1
    • AAI clade 6-13 medoid: miga SW19B 10676 0021 idba bin 44
    • AAI clade 6-14 medoid: asm GCA 001603625 1
    • AAI clade 6-15 medoid: asm GCA 002432165 1
    • AAI clade 6-16 medoid: asm GCA 001802685 1
    • AAI clade 6-17 medoid: miga WD15A P1163 101 38
    • AAI clade 6-18 medoid: asm GCF 000365325 1
    • AAI clade 6-19 medoid: asm GCA 003648385 1
    • AAI clade 6-20 medoid: asm GCA 002336655 1
    • AAI clade 6-21 medoid: miga DE18A TARA ANW MAG 00013
    • AAI clade 6-22 medoid: asm GCA 003973085 1
    • AAI clade 6-23 medoid: gb LADZ00000000
    • AAI clade 6-24 medoid: asm GCA 002427735 1
    • AAI clade 6-25 medoid: asm GCF 000021565 1
    • AAI clade 6-26 medoid: gb MEOL00000000
    • AAI clade 6-27 medoid: asm GCA 001768355 1
    • AAI clade 6-28 medoid: asm GCA 002293185 1
    • AAI clade 6-29 medoid: asm GCA 004292865 1
    • AAI clade 6-30 medoid: asm GCA 001577105 1
    • AAI clade 6-31 medoid: asm GCA 003648635 1
    • AAI clade 6-32 medoid: asm GCA 001775405 1
    • AAI clade 6-33 medoid: miga SW19B 10677 0015 idba bin 194
    • AAI clade 6-34 medoid: gb PLLO00000000
    • AAI clade 6-35 medoid: gb PLMC00000000
    • AAI clade 6-36 medoid: miga AP18A bin 81
    • AAI clade 6-37 medoid: asm GCA 003550825 1
    • AAI clade 6-38 medoid: asm GCA 002308665 1
    • AAI clade 6-39 medoid: asm GCA 002336805 1
    • AAI clade 6-40 medoid: asm GCA 002420145 1
    • AAI clade 6-41 medoid: asm GCA 003557045 1
    • AAI clade 6-42 medoid: asm GCA 002441565 1
    • AAI clade 6-43 medoid: asm GCA 002329125 1
    • AAI clade 6-44 medoid: miga DE18A TARA ANW MAG 00012
    • AAI clade 6-45 medoid: asm GCA 001509335 1
    • AAI clade 6-46 medoid: asm GCA 003332085 1
    • AAI clade 6-47 medoid: asm GCA 002772535 1
    • AAI clade 6-48 medoid: asm GCA 003567775 1
    • AAI clade 6-49 medoid: asm GCA 002344845 1
    • AAI clade 6-50 medoid: miga DE18A TARA MED MAG 00010
    • AAI clade 6-51 medoid: miga DE18A TARA MED MAG 00004
    • AAI clade 6-52 medoid: asm GCA 002323545 1
    • AAI clade 6-53 medoid: asm GCA 002453235 1
    • AAI clade 6-54 medoid: asm GCA 002336185 1
    • AAI clade 6-55 medoid: asm GCA 002455135 1
    • AAI clade 6-56 medoid: asm GCA 002360495 1
    • AAI clade 6-57 medoid: miga DE18A TARA ION MAG 00047
    • AAI clade 6-58 medoid: asm GCA 002483265 1
    • AAI clade 6-59 medoid: gb PMIW00000000
    • AAI clade 6-60 medoid: asm GCA 003731685 1
    • AAI clade 6-61 medoid: asm GCA 002346595 1
    • AAI clade 6-62 medoid: miga PS19A CM madagascar A19 01 1FE bin 27
    • AAI clade 6-63 medoid: miga PS19A CM madagascar A08 01 1FE bin 40
    • AAI clade 6-64 medoid: asm GCA 002314135 1
    • AAI clade 6-65 medoid: asm GCA 002385185 1
    • AAI clade 6-66 medoid: asm GCA 003599275 1
    • AAI clade 6-67 medoid: miga PS19A HMP 2012 SRS015899 bin 21
    • AAI clade 6-68 medoid: asm GCA 002320935 1
    • AAI clade 6-69 medoid: asm GCA 003023045 1
    • AAI clade 6-70 medoid: miga ZQ19A BG 657
    • AAI clade 6-71 medoid: asm GCA 002420705 1
    • AAI clade 6-72 medoid: asm GCA 002418835 1
    • AAI clade 6-73 medoid: asm GCA 003556285 1
    • AAI clade 6-74 medoid: asm GCA 001779875 1
    • AAI clade 6-75 medoid: miga DE18A TARA ANE MAG 00069
    • AAI clade 6-76 medoid: asm GCA 001769035 1
    • AAI clade 6-77 medoid: asm GCA 003560775 1
    • AAI clade 6-78 medoid: miga WD15A P1181 101 23
    • AAI clade 6-79 medoid: asm GCA 001829415 1
    • AAI clade 6-80 medoid: asm GCA 002085205 1
    • AAI clade 6-81 medoid: asm GCA 002030045 1
    • AAI clade 6-82 medoid: asm GCA 003023275 1
    • AAI clade 6-83 medoid: asm GCA 003559015 1
    • AAI clade 6-84 medoid: asm GCA 003553405 1
    • AAI clade 6-85 medoid: asm GCA 003559695 1
    • AAI clade 6-86 medoid: asm GCA 003567355 1
    • AAI clade 6-87 medoid: asm GCA 003567795 1
    • AAI clade 6-88 medoid: asm GCA 003561755 1
    • AAI clade 6-89 medoid: miga DE18A TARA ION MAG 00039
    • AAI clade 6-90 medoid: asm GCA 002457035 1
    • AAI clade 6-91 medoid: asm GCA 003331405 1
    • AAI clade 6-92 medoid: miga SS18B METABAT VerySpecific 339
    • AAI clade 6-93 medoid: miga FB16A E2
    • AAI clade 6-94 medoid: miga DE18A TARA PON MAG 00007
    • AAI clade 6-95 medoid: miga DE18A TARA PSE MAG 00057
    • AAI clade 6-96 medoid: miga DE18A TARA PSE MAG 00068
    • AAI clade 6-97 medoid: miga DE18A TARA PSW MAG 00114
    • AAI clade 6-98 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES10 bin 40
    • AAI clade 6-99 medoid: miga PS19A BritoIL 2016 M2 52 ST bin 74
    • AAI clade 6-100 medoid: miga PS19A CM periimplantitis SP 323SPI T016 bin 13
  • AAI clade 7 medoid: asm GCA 003220495 1
  • AAI clade 8 medoid: asm GCA 001768045 1
  • AAI clade 9 medoid: miga ZQ19A BG 239
  • AAI clade 10 medoid: asm GCA 002508675 1
  • AAI clade 11 medoid: miga PU18A 2609459660
  • AAI clade 12 medoid: asm GCA 003662385 1
  • AAI clade 13 medoid: asm GCA 002869845 2
  • AAI clade 14 medoid: miga ZQ19A BG 334
  • AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
  • AAI clade 16 medoid: asm GCA 003218215 1
  • AAI clade 17 medoid: gb PMWP00000000
  • AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
  • AAI clade 19 medoid: miga ZQ19A BG 192
  • AAI clade 20 medoid: asm GCA 003222055 1
  • AAI clade 21 medoid: asm GCA 002304435 1
  • AAI clade 22 medoid: gb PMOA00000000
  • AAI clade 23 medoid: asm GCA 001180165 1
  • AAI clade 24 medoid: asm GCA 900155275 1
  • AAI clade 25 medoid: asm GCA 003562785 1
  • AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
  • AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
  • AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
  • AAI clade 29 medoid: asm GCA 900317055 1
  • AAI clade 30 medoid: gb MERW00000000
  • AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
  • AAI clade 32 medoid: asm GCA 002320005 1
  • AAI clade 33 medoid: asm GCA 900318825 1
  • AAI clade 34 medoid: miga BA16A 35 5E
  • AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
  • AAI clade 36 medoid: asm GCA 001604115 1
  • AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
  • AAI clade 38 medoid: miga BA16A 35 12A
  • AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
  • AAI clade 40 medoid: asm GCA 002372655 1
  • AAI clade 41 medoid: miga ZQ19A BG 670
  • AAI clade 42 medoid: asm GCA 002732585 1
  • AAI clade 43 medoid: gb MFTG00000000
  • AAI clade 44 medoid: asm GCF 000217915 1
  • AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
  • AAI clade 46 medoid: asm GCA 005503595 1
  • AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
  • AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
  • AAI clade 49 medoid: asm GCA 002787475 1
  • AAI clade 50 medoid: asm GCA 002411275 1
  • AAI clade 51 medoid: asm GCA 001003965 1
  • AAI clade 52 medoid: asm GCA 900315795 1
  • AAI clade 53 medoid: asm GCA 002782265 1
  • AAI clade 54 medoid: asm GCA 002506275 1
  • AAI clade 55 medoid: asm GCA 002501805 1
  • AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
  • AAI clade 57 medoid: asm GCA 002362915 1
  • AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
  • AAI clade 59 medoid: asm GCA 002478295 1
  • AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
  • AAI clade 61 medoid: asm GCA 002373045 1
  • AAI clade 62 medoid: gb PLQF00000000
  • AAI clade 63 medoid: asm GCA 002352835 1
  • AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
  • AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
  • AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
  • AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
  • AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
  • AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
  • AAI clade 70 medoid: asm GCA 002369075 1
  • AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
  • AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
  • AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
  • AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
  • AAI clade 75 medoid: asm GCA 002294525 1
  • AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
  • AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
  • AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
  • AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
  • AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
  • AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
  • AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
  • AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
  • AAI clade 84 medoid: asm GCA 003020965 1
  • AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
  • AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
  • AAI clade 87 medoid: asm GCA 001701225 1
  • AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
  • AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
  • AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
  • AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
  • AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
  • AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1