AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 6-1
medoid: asm GCA 003854975 1
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AAI clade 6-2
medoid: miga ZQ19A BG 240
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AAI clade 6-3
medoid: gb PMZO00000000
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AAI clade 6-4
medoid: asm GCA 002426145 1
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AAI clade 6-5
medoid: gb LLZO00000000
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AAI clade 6-6
medoid: asm GCA 001802995 1
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AAI clade 6-7
medoid: asm GCA 900000315 1
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AAI clade 6-8
medoid: gb PMJR00000000
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AAI clade 6-9
medoid: asm GCA 002737625 1
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AAI clade 6-10
medoid: asm GCA 001769385 1
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AAI clade 6-11
medoid: asm GCA 002049825 1
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AAI clade 6-12
medoid: asm GCA 001603415 1
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AAI clade 6-13
medoid: miga SW19B 10676 0021 idba bin 44
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AAI clade 6-14
medoid: asm GCA 001603625 1
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AAI clade 6-15
medoid: asm GCA 002432165 1
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AAI clade 6-16
medoid: asm GCA 001802685 1
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AAI clade 6-17
medoid: miga WD15A P1163 101 38
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AAI clade 6-18
medoid: asm GCF 000365325 1
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AAI clade 6-19
medoid: asm GCA 003648385 1
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AAI clade 6-20
medoid: asm GCA 002336655 1
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AAI clade 6-21
medoid: miga DE18A TARA ANW MAG 00013
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AAI clade 6-22
medoid: asm GCA 003973085 1
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AAI clade 6-23
medoid: gb LADZ00000000
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AAI clade 6-24
medoid: asm GCA 002427735 1
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AAI clade 6-25
medoid: asm GCF 000021565 1
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AAI clade 6-26
medoid: gb MEOL00000000
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AAI clade 6-27
medoid: asm GCA 001768355 1
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AAI clade 6-28
medoid: asm GCA 002293185 1
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AAI clade 6-29
medoid: asm GCA 004292865 1
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AAI clade 6-30
medoid: asm GCA 001577105 1
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AAI clade 6-31
medoid: asm GCA 003648635 1
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AAI clade 6-32
medoid: asm GCA 001775405 1
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AAI clade 6-33
medoid: miga SW19B 10677 0015 idba bin 194
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AAI clade 6-34
medoid: gb PLLO00000000
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AAI clade 6-35
medoid: gb PLMC00000000
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AAI clade 6-36
medoid: miga AP18A bin 81
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AAI clade 6-37
medoid: asm GCA 003550825 1
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AAI clade 6-38
medoid: asm GCA 002308665 1
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AAI clade 6-39
medoid: asm GCA 002336805 1
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AAI clade 6-40
medoid: asm GCA 002420145 1
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AAI clade 6-41
medoid: asm GCA 003557045 1
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AAI clade 6-42
medoid: asm GCA 002441565 1
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AAI clade 6-43
medoid: asm GCA 002329125 1
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AAI clade 6-44
medoid: miga DE18A TARA ANW MAG 00012
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AAI clade 6-45
medoid: asm GCA 001509335 1
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AAI clade 6-46
medoid: asm GCA 003332085 1
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AAI clade 6-47
medoid: asm GCA 002772535 1
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AAI clade 6-48
medoid: asm GCA 003567775 1
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AAI clade 6-49
medoid: asm GCA 002344845 1
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AAI clade 6-50
medoid: miga DE18A TARA MED MAG 00010
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AAI clade 6-51
medoid: miga DE18A TARA MED MAG 00004
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AAI clade 6-52
medoid: asm GCA 002323545 1
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AAI clade 6-53
medoid: asm GCA 002453235 1
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AAI clade 6-54
medoid: asm GCA 002336185 1
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AAI clade 6-55
medoid: asm GCA 002455135 1
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AAI clade 6-56
medoid: asm GCA 002360495 1
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AAI clade 6-57
medoid: miga DE18A TARA ION MAG 00047
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AAI clade 6-58
medoid: asm GCA 002483265 1
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AAI clade 6-59
medoid: gb PMIW00000000
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AAI clade 6-60
medoid: asm GCA 003731685 1
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AAI clade 6-61
medoid: asm GCA 002346595 1
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AAI clade 6-62
medoid: miga PS19A CM madagascar A19 01 1FE bin 27
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AAI clade 6-63
medoid: miga PS19A CM madagascar A08 01 1FE bin 40
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AAI clade 6-64
medoid: asm GCA 002314135 1
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AAI clade 6-65
medoid: asm GCA 002385185 1
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AAI clade 6-66
medoid: asm GCA 003599275 1
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AAI clade 6-67
medoid: miga PS19A HMP 2012 SRS015899 bin 21
7 datasets: asm GCA 002422305 1 (AAI: 51.62%), asm GCA 002435385 1 (AAI: 48.62%), asm GCA 004563595 2 (AAI: 50.67%), gb ASNE00000000 (AAI: 49.7%), gb ASND00000000 (AAI: 49.24%), miga PS19A HMP 2012 SRS011126 bin 26 (AAI: 63.48%), and miga PS19A HMP 2012 SRS015899 bin 21 (AAI: 100.0%)
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AAI clade 6-68
medoid: asm GCA 002320935 1
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AAI clade 6-69
medoid: asm GCA 003023045 1
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AAI clade 6-70
medoid: miga ZQ19A BG 657
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AAI clade 6-71
medoid: asm GCA 002420705 1
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AAI clade 6-72
medoid: asm GCA 002418835 1
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AAI clade 6-73
medoid: asm GCA 003556285 1
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AAI clade 6-74
medoid: asm GCA 001779875 1
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AAI clade 6-75
medoid: miga DE18A TARA ANE MAG 00069
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AAI clade 6-76
medoid: asm GCA 001769035 1
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AAI clade 6-77
medoid: asm GCA 003560775 1
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AAI clade 6-78
medoid: miga WD15A P1181 101 23
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AAI clade 6-79
medoid: asm GCA 001829415 1
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AAI clade 6-80
medoid: asm GCA 002085205 1
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AAI clade 6-81
medoid: asm GCA 002030045 1
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AAI clade 6-82
medoid: asm GCA 003023275 1
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AAI clade 6-83
medoid: asm GCA 003559015 1
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AAI clade 6-84
medoid: asm GCA 003553405 1
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AAI clade 6-85
medoid: asm GCA 003559695 1
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AAI clade 6-86
medoid: asm GCA 003567355 1
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AAI clade 6-87
medoid: asm GCA 003567795 1
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AAI clade 6-88
medoid: asm GCA 003561755 1
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AAI clade 6-89
medoid: miga DE18A TARA ION MAG 00039
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AAI clade 6-90
medoid: asm GCA 002457035 1
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AAI clade 6-91
medoid: asm GCA 003331405 1
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AAI clade 6-92
medoid: miga SS18B METABAT VerySpecific 339
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AAI clade 6-93
medoid: miga FB16A E2
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AAI clade 6-94
medoid: miga DE18A TARA PON MAG 00007
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AAI clade 6-95
medoid: miga DE18A TARA PSE MAG 00057
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AAI clade 6-96
medoid: miga DE18A TARA PSE MAG 00068
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AAI clade 6-97
medoid: miga DE18A TARA PSW MAG 00114
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AAI clade 6-98
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES10 bin 40
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AAI clade 6-99
medoid: miga PS19A BritoIL 2016 M2 52 ST bin 74
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AAI clade 6-100
medoid: miga PS19A CM periimplantitis SP 323SPI T016 bin 13
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AAI clade 6-1
medoid: asm GCA 003854975 1
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1