AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: asm GCA 900155255 1
• AAI clade 2 medoid: asm GCA 003225555 1
• AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
• AAI clade 4 medoid: miga BA16A LX33 339
• AAI clade 5 medoid: asm GCA 002344625 1
  • AAI clade 5-1 medoid: asm GCA 003819825 1
  • AAI clade 5-2 medoid: asm GCA 001464815 1
  • AAI clade 5-3 medoid: asm GCA 003818515 1
  • AAI clade 5-4 medoid: asm GCA 003818495 1
  • AAI clade 5-5 medoid: miga PS19A CM cf CF TNFC018IS t1M15 bin 13
  • AAI clade 5-6 medoid: asm GCA 001464125 1
  • AAI clade 5-7 medoid: asm GCA 002401225 1
  • AAI clade 5-8 medoid: asm GCA 003105245 1
  • AAI clade 5-9 medoid: miga WD15A P1181 101 58
  • AAI clade 5-10 medoid: asm GCA 003105015 1
  • AAI clade 5-11 medoid: asm GCA 002422685 1
  • AAI clade 5-12 medoid: asm GCA 004294365 1
  • AAI clade 5-13 medoid: asm GCA 001464355 1
  • AAI clade 5-14 medoid: asm GCA 002419745 1
  • AAI clade 5-15 medoid: asm GCA 900154715 1
  • AAI clade 5-16 medoid: asm GCA 900153655 1
  • AAI clade 5-17 medoid: asm GCA 900290295 1
  • AAI clade 5-18 medoid: asm GCF 001190925 1
  • AAI clade 5-19 medoid: asm GCA 001772055 1
  • AAI clade 5-20 medoid: asm GCA 001304425 1
  • AAI clade 5-21 medoid: asm GCA 001770395 1
  • AAI clade 5-22 medoid: asm GCA 002476455 1
  • AAI clade 5-23 medoid: asm GCA 002470165 1
  • AAI clade 5-24 medoid: miga DE18A TARA MED MAG 00033
    2 datasets: asm GCA 002367635 1 (AAI: 65.41%) and miga DE18A TARA MED MAG 00033 (AAI: 100.0%)
  • AAI clade 5-25 medoid: asm GCA 001770495 1
  • AAI clade 5-26 medoid: asm GCA 002451065 1
  • AAI clade 5-27 medoid: asm GCA 002293615 1
  • AAI clade 5-28 medoid: asm GCA 002342145 1
  • AAI clade 5-29 medoid: miga AP18A bin 83
  • AAI clade 5-30 medoid: asm GCA 002405475 1
  • AAI clade 5-31 medoid: asm GCA 002473065 1
  • AAI clade 5-32 medoid: asm GCA 002470265 1
  • AAI clade 5-33 medoid: asm GCA 002352265 1
  • AAI clade 5-34 medoid: asm GCA 002345025 1
  • AAI clade 5-35 medoid: asm GCA 005503625 1
  • AAI clade 5-36 medoid: asm GCA 001801025 1
  • AAI clade 5-37 medoid: gb PLWV00000000
  • AAI clade 5-38 medoid: asm GCA 001801055 1
  • AAI clade 5-39 medoid: miga WD15A P1181 103 21
  • AAI clade 5-40 medoid: miga AP18A bin 63
  • AAI clade 5-41 medoid: asm GCA 001803395 1
  • AAI clade 5-42 medoid: asm GCA 002367935 1
  • AAI clade 5-43 medoid: asm GCA 002448775 1
  • AAI clade 5-44 medoid: gb JZQZ00000000
  • AAI clade 5-45 medoid: asm GCA 002435335 1
  • AAI clade 5-46 medoid: asm GCA 002292975 1
  • AAI clade 5-47 medoid: asm GCA 002342285 1
  • AAI clade 5-48 medoid: asm GCA 002375405 1
  • AAI clade 5-49 medoid: asm GCA 005503115 1
  • AAI clade 5-50 medoid: asm GCA 002307175 1
  • AAI clade 5-51 medoid: miga WD15A P1181 103 36
  • AAI clade 5-52 medoid: asm GCA 002422995 1
  • AAI clade 5-53 medoid: asm GCA 002424845 1
  • AAI clade 5-54 medoid: asm GCA 002421825 1
  • AAI clade 5-55 medoid: asm GCA 002341815 1
  • AAI clade 5-56 medoid: asm GCA 002360535 1
  • AAI clade 5-57 medoid: asm GCA 002293205 1
  • AAI clade 5-58 medoid: asm GCA 001770435 1
  • AAI clade 5-59 medoid: asm GCA 001770285 1
  • AAI clade 5-60 medoid: asm GCA 001770585 1
  • AAI clade 5-61 medoid: gb MERL00000000
  • AAI clade 5-62 medoid: miga AP18A bin 76
  • AAI clade 5-63 medoid: asm GCA 001828935 1
  • AAI clade 5-64 medoid: asm GCA 001830485 1
  • AAI clade 5-65 medoid: asm GCA 003565235 1
  • AAI clade 5-66 medoid: asm GCA 003565695 1
  • AAI clade 5-67 medoid: miga DE18A TARA PSW MAG 00042
  • AAI clade 5-68 medoid: asm GCA 005503445 1
  • AAI clade 5-69 medoid: miga PS19A HMP 2012 SRS015989 bin 26
  • AAI clade 5-70 medoid: asm GCA 001920245 1
  • AAI clade 5-71 medoid: asm GCA 001464895 1
  • AAI clade 5-72 medoid: gb PLYG00000000
  • AAI clade 5-73 medoid: gb MEQN00000000
  • AAI clade 5-74 medoid: gb CP012157
  • AAI clade 5-75 medoid: miga DE18A TARA ASE MAG 00008
  • AAI clade 5-76 medoid: miga DE18A TARA MED MAG 00089
  • AAI clade 5-77 medoid: miga DE18A TARA MED MAG 00049
  • AAI clade 5-78 medoid: miga DE18A TARA MED MAG 00061
  • AAI clade 5-79 medoid: miga DE18A TARA PSW MAG 00033
  • AAI clade 5-80 medoid: miga ZQ19A BG 227
  • AAI clade 5-81 medoid: miga ZQ19A BG 333
  • AAI clade 5-82 medoid: miga AP18A bin 85
  • AAI clade 5-83 medoid: miga PS19A BritoIL 2016 W1 2 ST bin 91
  • AAI clade 5-84 medoid: miga PS19A CM cf CF TNFC039IS t1M15 bin 16
  • AAI clade 5-85 medoid: miga PS19A DavidLA 2015 LD Run2 08 bin 6
  • AAI clade 5-86 medoid: miga PS19A HMP 2012 SRS015799 bin 2
  • AAI clade 5-87 medoid: miga PS19A CM periimplantitis SP 345SPT T016 bin 6
  • AAI clade 5-88 medoid: miga PS19A HMP 2012 SRS023938 bin 19
  • AAI clade 5-89 medoid: miga PS19A HMP 2012 SRS013170 bin 19
  • AAI clade 5-90 medoid: miga PS19A HMP 2012 SRS019064 bin 6
  • AAI clade 5-91 medoid: miga PS19A HMP 2012 SRS019081 bin 1
  • AAI clade 5-92 medoid: miga PS19A HMP 2012 SRS043018 bin 33
  • AAI clade 5-93 medoid: miga PS19A OhJ 2014 MET0251 bin 84
  • AAI clade 5-94 medoid: miga PS19A RaymondF 2016 P21E90 bin 89
  • AAI clade 5-95 medoid: miga PS19A VincentC 2016 MM010 megahit bin 31
• AAI clade 6 medoid: miga ZQ19A BG 240
• AAI clade 7 medoid: asm GCA 003220495 1
• AAI clade 8 medoid: asm GCA 001768045 1
• AAI clade 9 medoid: miga ZQ19A BG 239
• AAI clade 10 medoid: asm GCA 002508675 1
• AAI clade 11 medoid: miga PU18A 2609459660
• AAI clade 12 medoid: asm GCA 003662385 1
• AAI clade 13 medoid: asm GCA 002869845 2
• AAI clade 14 medoid: miga ZQ19A BG 334
• AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
• AAI clade 16 medoid: asm GCA 003218215 1
• AAI clade 17 medoid: gb PMWP00000000
• AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
• AAI clade 19 medoid: miga ZQ19A BG 192
• AAI clade 20 medoid: asm GCA 003222055 1
• AAI clade 21 medoid: asm GCA 002304435 1
• AAI clade 22 medoid: gb PMOA00000000
• AAI clade 23 medoid: asm GCA 001180165 1
• AAI clade 24 medoid: asm GCA 900155275 1
• AAI clade 25 medoid: asm GCA 003562785 1
• AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
• AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
• AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
• AAI clade 29 medoid: asm GCA 900317055 1
• AAI clade 30 medoid: gb MERW00000000
• AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
• AAI clade 32 medoid: asm GCA 002320005 1
• AAI clade 33 medoid: asm GCA 900318825 1
• AAI clade 34 medoid: miga BA16A 35 5E
• AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
• AAI clade 36 medoid: asm GCA 001604115 1
• AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
• AAI clade 38 medoid: miga BA16A 35 12A
• AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
• AAI clade 40 medoid: asm GCA 002372655 1
• AAI clade 41 medoid: miga ZQ19A BG 670
• AAI clade 42 medoid: asm GCA 002732585 1
• AAI clade 43 medoid: gb MFTG00000000
• AAI clade 44 medoid: asm GCF 000217915 1
• AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
• AAI clade 46 medoid: asm GCA 005503595 1
• AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
• AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
• AAI clade 49 medoid: asm GCA 002787475 1
• AAI clade 50 medoid: asm GCA 002411275 1
• AAI clade 51 medoid: asm GCA 001003965 1
• AAI clade 52 medoid: asm GCA 900315795 1
• AAI clade 53 medoid: asm GCA 002782265 1
• AAI clade 54 medoid: asm GCA 002506275 1
• AAI clade 55 medoid: asm GCA 002501805 1
• AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
• AAI clade 57 medoid: asm GCA 002362915 1
• AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
• AAI clade 59 medoid: asm GCA 002478295 1
• AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
• AAI clade 61 medoid: asm GCA 002373045 1
• AAI clade 62 medoid: gb PLQF00000000
• AAI clade 63 medoid: asm GCA 002352835 1
• AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
• AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
• AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
• AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
• AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
• AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
• AAI clade 70 medoid: asm GCA 002369075 1
• AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
• AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
• AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
• AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
• AAI clade 75 medoid: asm GCA 002294525 1
• AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
• AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
• AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
• AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
• AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
• AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
• AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
• AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
• AAI clade 84 medoid: asm GCA 003020965 1
• AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
• AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
• AAI clade 87 medoid: asm GCA 001701225 1
• AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
• AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
• AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
• AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
• AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
• AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1