AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 5-1
medoid: asm GCA 003819825 1
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AAI clade 5-2
medoid: asm GCA 001464815 1
3 datasets: asm GCA 003820645 1 (AAI: 65.83%), asm GCA 001464815 1 (AAI: 100.0%), and miga AP18A bin 77 (AAI: 66.18%)
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AAI clade 5-3
medoid: asm GCA 003818515 1
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AAI clade 5-4
medoid: asm GCA 003818495 1
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AAI clade 5-5
medoid: miga PS19A CM cf CF TNFC018IS t1M15 bin 13
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AAI clade 5-6
medoid: asm GCA 001464125 1
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AAI clade 5-7
medoid: asm GCA 002401225 1
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AAI clade 5-8
medoid: asm GCA 003105245 1
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AAI clade 5-9
medoid: miga WD15A P1181 101 58
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AAI clade 5-10
medoid: asm GCA 003105015 1
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AAI clade 5-11
medoid: asm GCA 002422685 1
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AAI clade 5-12
medoid: asm GCA 004294365 1
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AAI clade 5-13
medoid: asm GCA 001464355 1
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AAI clade 5-14
medoid: asm GCA 002419745 1
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AAI clade 5-15
medoid: asm GCA 900154715 1
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AAI clade 5-16
medoid: asm GCA 900153655 1
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AAI clade 5-17
medoid: asm GCA 900290295 1
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AAI clade 5-18
medoid: asm GCF 001190925 1
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AAI clade 5-19
medoid: asm GCA 001772055 1
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AAI clade 5-20
medoid: asm GCA 001304425 1
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AAI clade 5-21
medoid: asm GCA 001770395 1
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AAI clade 5-22
medoid: asm GCA 002476455 1
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AAI clade 5-23
medoid: asm GCA 002470165 1
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AAI clade 5-24
medoid: miga DE18A TARA MED MAG 00033
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AAI clade 5-25
medoid: asm GCA 001770495 1
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AAI clade 5-26
medoid: asm GCA 002451065 1
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AAI clade 5-27
medoid: asm GCA 002293615 1
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AAI clade 5-28
medoid: asm GCA 002342145 1
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AAI clade 5-29
medoid: miga AP18A bin 83
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AAI clade 5-30
medoid: asm GCA 002405475 1
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AAI clade 5-31
medoid: asm GCA 002473065 1
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AAI clade 5-32
medoid: asm GCA 002470265 1
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AAI clade 5-33
medoid: asm GCA 002352265 1
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AAI clade 5-34
medoid: asm GCA 002345025 1
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AAI clade 5-35
medoid: asm GCA 005503625 1
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AAI clade 5-36
medoid: asm GCA 001801025 1
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AAI clade 5-37
medoid: gb PLWV00000000
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AAI clade 5-38
medoid: asm GCA 001801055 1
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AAI clade 5-39
medoid: miga WD15A P1181 103 21
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AAI clade 5-40
medoid: miga AP18A bin 63
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AAI clade 5-41
medoid: asm GCA 001803395 1
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AAI clade 5-42
medoid: asm GCA 002367935 1
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AAI clade 5-43
medoid: asm GCA 002448775 1
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AAI clade 5-44
medoid: gb JZQZ00000000
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AAI clade 5-45
medoid: asm GCA 002435335 1
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AAI clade 5-46
medoid: asm GCA 002292975 1
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AAI clade 5-47
medoid: asm GCA 002342285 1
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AAI clade 5-48
medoid: asm GCA 002375405 1
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AAI clade 5-49
medoid: asm GCA 005503115 1
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AAI clade 5-50
medoid: asm GCA 002307175 1
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AAI clade 5-51
medoid: miga WD15A P1181 103 36
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AAI clade 5-52
medoid: asm GCA 002422995 1
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AAI clade 5-53
medoid: asm GCA 002424845 1
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AAI clade 5-54
medoid: asm GCA 002421825 1
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AAI clade 5-55
medoid: asm GCA 002341815 1
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AAI clade 5-56
medoid: asm GCA 002360535 1
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AAI clade 5-57
medoid: asm GCA 002293205 1
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AAI clade 5-58
medoid: asm GCA 001770435 1
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AAI clade 5-59
medoid: asm GCA 001770285 1
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AAI clade 5-60
medoid: asm GCA 001770585 1
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AAI clade 5-61
medoid: gb MERL00000000
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AAI clade 5-62
medoid: miga AP18A bin 76
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AAI clade 5-63
medoid: asm GCA 001828935 1
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AAI clade 5-64
medoid: asm GCA 001830485 1
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AAI clade 5-65
medoid: asm GCA 003565235 1
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AAI clade 5-66
medoid: asm GCA 003565695 1
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AAI clade 5-67
medoid: miga DE18A TARA PSW MAG 00042
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AAI clade 5-68
medoid: asm GCA 005503445 1
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AAI clade 5-69
medoid: miga PS19A HMP 2012 SRS015989 bin 26
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AAI clade 5-70
medoid: asm GCA 001920245 1
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AAI clade 5-71
medoid: asm GCA 001464895 1
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AAI clade 5-72
medoid: gb PLYG00000000
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AAI clade 5-73
medoid: gb MEQN00000000
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AAI clade 5-74
medoid: gb CP012157
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AAI clade 5-75
medoid: miga DE18A TARA ASE MAG 00008
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AAI clade 5-76
medoid: miga DE18A TARA MED MAG 00089
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AAI clade 5-77
medoid: miga DE18A TARA MED MAG 00049
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AAI clade 5-78
medoid: miga DE18A TARA MED MAG 00061
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AAI clade 5-79
medoid: miga DE18A TARA PSW MAG 00033
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AAI clade 5-80
medoid: miga ZQ19A BG 227
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AAI clade 5-81
medoid: miga ZQ19A BG 333
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AAI clade 5-82
medoid: miga AP18A bin 85
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AAI clade 5-83
medoid: miga PS19A BritoIL 2016 W1 2 ST bin 91
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AAI clade 5-84
medoid: miga PS19A CM cf CF TNFC039IS t1M15 bin 16
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AAI clade 5-85
medoid: miga PS19A DavidLA 2015 LD Run2 08 bin 6
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AAI clade 5-86
medoid: miga PS19A HMP 2012 SRS015799 bin 2
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AAI clade 5-87
medoid: miga PS19A CM periimplantitis SP 345SPT T016 bin 6
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AAI clade 5-88
medoid: miga PS19A HMP 2012 SRS023938 bin 19
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AAI clade 5-89
medoid: miga PS19A HMP 2012 SRS013170 bin 19
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AAI clade 5-90
medoid: miga PS19A HMP 2012 SRS019064 bin 6
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AAI clade 5-91
medoid: miga PS19A HMP 2012 SRS019081 bin 1
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AAI clade 5-92
medoid: miga PS19A HMP 2012 SRS043018 bin 33
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AAI clade 5-93
medoid: miga PS19A OhJ 2014 MET0251 bin 84
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AAI clade 5-94
medoid: miga PS19A RaymondF 2016 P21E90 bin 89
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AAI clade 5-95
medoid: miga PS19A VincentC 2016 MM010 megahit bin 31
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AAI clade 5-1
medoid: asm GCA 003819825 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1