AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 36-1
medoid: miga PS19A FengQ 2015 SID530041 bin 54
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AAI clade 36-2
medoid: asm GCA 001604115 1
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AAI clade 36-3
medoid: asm GCA 001604475 1
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AAI clade 36-4
medoid: asm GCA 002316765 1
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AAI clade 36-5
medoid: asm GCA 002309375 1
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AAI clade 36-6
medoid: miga SW19B 10676 min2k bin 1722
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AAI clade 36-7
medoid: asm GCA 002308575 1
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AAI clade 36-8
medoid: asm GCA 002329335 1
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AAI clade 36-9
medoid: asm GCA 002329665 1
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AAI clade 36-10
medoid: miga PS19A HMP 2012 SRS049959 bin 65
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AAI clade 36-11
medoid: asm GCA 002492415 1
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AAI clade 36-12
medoid: miga SW19B 10677 0030 idba bin 45
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AAI clade 36-13
medoid: asm GCA 002369195 1
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AAI clade 36-14
medoid: asm GCA 900313585 1
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AAI clade 36-15
medoid: asm GCA 002395225 1
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AAI clade 36-16
medoid: miga PS19A LiJ 2014 V1 FI17 bin 83
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AAI clade 36-17
medoid: miga PS19A HeQ 2017 RSZAXPI003069 101 bin 9
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AAI clade 36-18
medoid: asm GCA 002435915 1
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AAI clade 36-19
medoid: miga PS19A LiSS 2016 FAT 023 22 0 0 bin 5
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AAI clade 36-20
medoid: asm GCA 002293365 1
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AAI clade 36-21
medoid: asm GCA 002347885 1
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AAI clade 36-22
medoid: asm GCA 002409165 1
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AAI clade 36-23
medoid: miga PS19A HeQ 2017 RSZAXPI003083 117 bin 6
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AAI clade 36-24
medoid: asm GCA 002387895 1
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AAI clade 36-25
medoid: asm GCA 002385545 1
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AAI clade 36-26
medoid: asm GCA 002341105 1
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AAI clade 36-27
medoid: miga PS19A GeversD 2014 SKBSTL023 bin 15
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AAI clade 36-28
medoid: asm GCA 002298915 1
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AAI clade 36-29
medoid: asm GCA 002385965 1
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AAI clade 36-30
medoid: asm GCA 002386065 1
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AAI clade 36-31
medoid: asm GCA 002385885 1
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AAI clade 36-32
medoid: asm GCA 002398065 1
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AAI clade 36-33
medoid: asm GCA 002308795 1
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AAI clade 36-34
medoid: asm GCA 002399285 1
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AAI clade 36-35
medoid: asm GCA 002428405 1
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AAI clade 36-36
medoid: asm GCA 001797185 1
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AAI clade 36-37
medoid: miga SW19B 10675 0047 idba bin 54
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AAI clade 36-38
medoid: miga SW19B 10674 0044 idba bin 25
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AAI clade 36-39
medoid: asm GCA 900316415 1
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AAI clade 36-40
medoid: miga SW19B 10675 0013 idba bin 66
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AAI clade 36-41
medoid: miga SW19B 10676 0046 idba bin 91
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AAI clade 36-42
medoid: miga SW19B 10674 0027 idba bin 2
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AAI clade 36-43
medoid: miga SW19B 10677 0018 idba bin 46
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AAI clade 36-43-1
medoid: miga SW19B 10677 0018 idba bin 46
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AAI clade 36-43-1-1
medoid: miga SW19B 10678 0051 idba bin 35
3 datasets: asm GCA 900313255 1 (AAI: 81.43%), miga SW19B 10674 0022 idba bin 6 (AAI: 77.18%), and miga SW19B 10678 0051 idba bin 35 (AAI: 100.0%)
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AAI clade 36-43-1-2
medoid: miga SW19B 10674 0007 idba bin 81
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AAI clade 36-43-1-3
medoid: miga SW19B 10674 0015 idba bin 134
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AAI clade 36-43-1-4
medoid: miga SW19B 10678 0048 idba bin 6
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AAI clade 36-43-1-5
medoid: miga SW19B 10677 0018 idba bin 46
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AAI clade 36-43-1-6
medoid: miga SW19B 10674 0036 idba bin 75
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AAI clade 36-43-1-1
medoid: miga SW19B 10678 0051 idba bin 35
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AAI clade 36-43-2
medoid: miga PS19A KarlssonFH 2013 S577 bin 19
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AAI clade 36-43-1
medoid: miga SW19B 10677 0018 idba bin 46
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AAI clade 36-44
medoid: gb PLAE00000000
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AAI clade 36-45
medoid: miga SS18B METABAT VerySpecific 675
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AAI clade 36-46
medoid: miga SW19B 10678 0003 idba bin 29
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AAI clade 36-47
medoid: miga SW19B 10676 0048 idba bin 41
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AAI clade 36-48
medoid: miga PS19A HMP 2012 SRS016095 bin 27
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AAI clade 36-49
medoid: miga PS19A LeChatelierE 2013 MH0206 bin 35
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AAI clade 36-50
medoid: miga SW19B 10676 min2k bin 922
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AAI clade 36-51
medoid: miga SW19B 10677 0018 idba bin 223
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AAI clade 36-52
medoid: miga SW19B 10677 0027 idba bin 87
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AAI clade 36-53
medoid: miga SW19B 10677 0029 idba bin 125
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AAI clade 36-54
medoid: miga PS19A VogtmannE 2016 MMRS71762412ST 27 0 0 bin 14
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AAI clade 36-55
medoid: miga SW19B 10677 min2k bin 2131
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AAI clade 36-56
medoid: miga PS19A BritoIL 2016 W1 8 ST bin 44
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AAI clade 36-57
medoid: miga PS19A BackhedF 2015 SID39 4M bin 18
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AAI clade 36-58
medoid: miga PS19A NielsenHB 2014 V1 CD41 0 bin 29
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AAI clade 36-59
medoid: miga PS19A BritoIL 2016 W2 43 ST bin 13
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AAI clade 36-60
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES9 bin 159
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AAI clade 36-61
medoid: miga PS19A LeChatelierE 2013 MH0431 bin 73
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AAI clade 36-62
medoid: miga PS19A YuJ 2015 SZAXPI017592 142 bin 36
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AAI clade 36-63
medoid: miga PS19A CosteaPI 2017 SID713B035 11 0 0 bin 37
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AAI clade 36-64
medoid: miga PS19A LiJ 2014 MH0373 bin 67
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AAI clade 36-65
medoid: miga PS19A VogtmannE 2016 MMRS38954404ST 27 0 0 bin 61
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AAI clade 36-66
medoid: miga PS19A CosteaPI 2017 SID713B051 11 0 0 bin 78
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AAI clade 36-67
medoid: miga PS19A FengQ 2015 SID31477 bin 59
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AAI clade 36-68
medoid: miga PS19A LiuW 2016 SRR3992985 bin 28
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AAI clade 36-69
medoid: miga PS19A LiuW 2016 SRR3992973 bin 7
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AAI clade 36-70
medoid: miga PS19A HeQ 2017 RSZAXPI003077 109 bin 47
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AAI clade 36-71
medoid: miga PS19A LeChatelierE 2013 MH0307 bin 40
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AAI clade 36-72
medoid: miga PS19A HMP 2012 SRS042628 bin 29
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AAI clade 36-73
medoid: miga PS19A RaymondF 2016 P15E90 bin 19
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AAI clade 36-74
medoid: miga PS19A LeChatelierE 2013 MH0422 bin 67
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AAI clade 36-75
medoid: miga PS19A LouisS 2016 AS60 3 bin 23
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AAI clade 36-76
medoid: miga PS19A RaymondF 2016 P21E90 bin 82
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AAI clade 36-77
medoid: miga PS19A RaymondF 2016 P21E90 bin 68
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AAI clade 36-78
medoid: miga PS19A VincentC 2016 MM089 1 megahit bin 3
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AAI clade 36-79
medoid: miga CB19A Bin 87 1 1
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AAI clade 36-1
medoid: miga PS19A FengQ 2015 SID530041 bin 54
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1