AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: asm GCA 900155255 1
• AAI clade 2 medoid: asm GCA 003225555 1
• AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
• AAI clade 4 medoid: miga BA16A LX33 339
• AAI clade 5 medoid: asm GCA 002344625 1
• AAI clade 6 medoid: miga ZQ19A BG 240
• AAI clade 7 medoid: asm GCA 003220495 1
• AAI clade 8 medoid: asm GCA 001768045 1
• AAI clade 9 medoid: miga ZQ19A BG 239
• AAI clade 10 medoid: asm GCA 002508675 1
• AAI clade 11 medoid: miga PU18A 2609459660
• AAI clade 12 medoid: asm GCA 003662385 1
• AAI clade 13 medoid: asm GCA 002869845 2
• AAI clade 14 medoid: miga ZQ19A BG 334
• AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
• AAI clade 16 medoid: asm GCA 003218215 1
• AAI clade 17 medoid: gb PMWP00000000
• AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
• AAI clade 19 medoid: miga ZQ19A BG 192
• AAI clade 20 medoid: asm GCA 003222055 1
• AAI clade 21 medoid: asm GCA 002304435 1
• AAI clade 22 medoid: gb PMOA00000000
• AAI clade 23 medoid: asm GCA 001180165 1
• AAI clade 24 medoid: asm GCA 900155275 1
• AAI clade 25 medoid: asm GCA 003562785 1
• AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
• AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
• AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
• AAI clade 29 medoid: asm GCA 900317055 1
• AAI clade 30 medoid: gb MERW00000000
• AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
• AAI clade 32 medoid: asm GCA 002320005 1
• AAI clade 33 medoid: asm GCA 900318825 1
• AAI clade 34 medoid: miga BA16A 35 5E
• AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
• AAI clade 36 medoid: asm GCA 001604115 1
  • AAI clade 36-1 medoid: miga PS19A FengQ 2015 SID530041 bin 54
  • AAI clade 36-2 medoid: asm GCA 001604115 1
  • AAI clade 36-3 medoid: asm GCA 001604475 1
    1 dataset: asm GCA 001604475 1 (AAI: 100.0%)
  • AAI clade 36-4 medoid: asm GCA 002316765 1
  • AAI clade 36-5 medoid: asm GCA 002309375 1
  • AAI clade 36-6 medoid: miga SW19B 10676 min2k bin 1722
  • AAI clade 36-7 medoid: asm GCA 002308575 1
  • AAI clade 36-8 medoid: asm GCA 002329335 1
  • AAI clade 36-9 medoid: asm GCA 002329665 1
  • AAI clade 36-10 medoid: miga PS19A HMP 2012 SRS049959 bin 65
  • AAI clade 36-11 medoid: asm GCA 002492415 1
  • AAI clade 36-12 medoid: miga SW19B 10677 0030 idba bin 45
  • AAI clade 36-13 medoid: asm GCA 002369195 1
  • AAI clade 36-14 medoid: asm GCA 900313585 1
  • AAI clade 36-15 medoid: asm GCA 002395225 1
  • AAI clade 36-16 medoid: miga PS19A LiJ 2014 V1 FI17 bin 83
  • AAI clade 36-17 medoid: miga PS19A HeQ 2017 RSZAXPI003069 101 bin 9
  • AAI clade 36-18 medoid: asm GCA 002435915 1
  • AAI clade 36-19 medoid: miga PS19A LiSS 2016 FAT 023 22 0 0 bin 5
  • AAI clade 36-20 medoid: asm GCA 002293365 1
  • AAI clade 36-21 medoid: asm GCA 002347885 1
  • AAI clade 36-22 medoid: asm GCA 002409165 1
  • AAI clade 36-23 medoid: miga PS19A HeQ 2017 RSZAXPI003083 117 bin 6
  • AAI clade 36-24 medoid: asm GCA 002387895 1
  • AAI clade 36-25 medoid: asm GCA 002385545 1
  • AAI clade 36-26 medoid: asm GCA 002341105 1
  • AAI clade 36-27 medoid: miga PS19A GeversD 2014 SKBSTL023 bin 15
  • AAI clade 36-28 medoid: asm GCA 002298915 1
  • AAI clade 36-29 medoid: asm GCA 002385965 1
  • AAI clade 36-30 medoid: asm GCA 002386065 1
  • AAI clade 36-31 medoid: asm GCA 002385885 1
  • AAI clade 36-32 medoid: asm GCA 002398065 1
  • AAI clade 36-33 medoid: asm GCA 002308795 1
  • AAI clade 36-34 medoid: asm GCA 002399285 1
  • AAI clade 36-35 medoid: asm GCA 002428405 1
  • AAI clade 36-36 medoid: asm GCA 001797185 1
  • AAI clade 36-37 medoid: miga SW19B 10675 0047 idba bin 54
  • AAI clade 36-38 medoid: miga SW19B 10674 0044 idba bin 25
  • AAI clade 36-39 medoid: asm GCA 900316415 1
  • AAI clade 36-40 medoid: miga SW19B 10675 0013 idba bin 66
  • AAI clade 36-41 medoid: miga SW19B 10676 0046 idba bin 91
  • AAI clade 36-42 medoid: miga SW19B 10674 0027 idba bin 2
  • AAI clade 36-43 medoid: miga SW19B 10677 0018 idba bin 46
  • AAI clade 36-44 medoid: gb PLAE00000000
  • AAI clade 36-45 medoid: miga SS18B METABAT VerySpecific 675
  • AAI clade 36-46 medoid: miga SW19B 10678 0003 idba bin 29
  • AAI clade 36-47 medoid: miga SW19B 10676 0048 idba bin 41
  • AAI clade 36-48 medoid: miga PS19A HMP 2012 SRS016095 bin 27
  • AAI clade 36-49 medoid: miga PS19A LeChatelierE 2013 MH0206 bin 35
  • AAI clade 36-50 medoid: miga SW19B 10676 min2k bin 922
  • AAI clade 36-51 medoid: miga SW19B 10677 0018 idba bin 223
  • AAI clade 36-52 medoid: miga SW19B 10677 0027 idba bin 87
  • AAI clade 36-53 medoid: miga SW19B 10677 0029 idba bin 125
  • AAI clade 36-54 medoid: miga PS19A VogtmannE 2016 MMRS71762412ST 27 0 0 bin 14
  • AAI clade 36-55 medoid: miga SW19B 10677 min2k bin 2131
  • AAI clade 36-56 medoid: miga PS19A BritoIL 2016 W1 8 ST bin 44
  • AAI clade 36-57 medoid: miga PS19A BackhedF 2015 SID39 4M bin 18
  • AAI clade 36-58 medoid: miga PS19A NielsenHB 2014 V1 CD41 0 bin 29
  • AAI clade 36-59 medoid: miga PS19A BritoIL 2016 W2 43 ST bin 13
  • AAI clade 36-60 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES9 bin 159
  • AAI clade 36-61 medoid: miga PS19A LeChatelierE 2013 MH0431 bin 73
  • AAI clade 36-62 medoid: miga PS19A YuJ 2015 SZAXPI017592 142 bin 36
  • AAI clade 36-63 medoid: miga PS19A CosteaPI 2017 SID713B035 11 0 0 bin 37
  • AAI clade 36-64 medoid: miga PS19A LiJ 2014 MH0373 bin 67
  • AAI clade 36-65 medoid: miga PS19A VogtmannE 2016 MMRS38954404ST 27 0 0 bin 61
  • AAI clade 36-66 medoid: miga PS19A CosteaPI 2017 SID713B051 11 0 0 bin 78
  • AAI clade 36-67 medoid: miga PS19A FengQ 2015 SID31477 bin 59
  • AAI clade 36-68 medoid: miga PS19A LiuW 2016 SRR3992985 bin 28
  • AAI clade 36-69 medoid: miga PS19A LiuW 2016 SRR3992973 bin 7
  • AAI clade 36-70 medoid: miga PS19A HeQ 2017 RSZAXPI003077 109 bin 47
  • AAI clade 36-71 medoid: miga PS19A LeChatelierE 2013 MH0307 bin 40
  • AAI clade 36-72 medoid: miga PS19A HMP 2012 SRS042628 bin 29
  • AAI clade 36-73 medoid: miga PS19A RaymondF 2016 P15E90 bin 19
  • AAI clade 36-74 medoid: miga PS19A LeChatelierE 2013 MH0422 bin 67
  • AAI clade 36-75 medoid: miga PS19A LouisS 2016 AS60 3 bin 23
  • AAI clade 36-76 medoid: miga PS19A RaymondF 2016 P21E90 bin 82
  • AAI clade 36-77 medoid: miga PS19A RaymondF 2016 P21E90 bin 68
  • AAI clade 36-78 medoid: miga PS19A VincentC 2016 MM089 1 megahit bin 3
  • AAI clade 36-79 medoid: miga CB19A Bin 87 1 1
• AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
• AAI clade 38 medoid: miga BA16A 35 12A
• AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
• AAI clade 40 medoid: asm GCA 002372655 1
• AAI clade 41 medoid: miga ZQ19A BG 670
• AAI clade 42 medoid: asm GCA 002732585 1
• AAI clade 43 medoid: gb MFTG00000000
• AAI clade 44 medoid: asm GCF 000217915 1
• AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
• AAI clade 46 medoid: asm GCA 005503595 1
• AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
• AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
• AAI clade 49 medoid: asm GCA 002787475 1
• AAI clade 50 medoid: asm GCA 002411275 1
• AAI clade 51 medoid: asm GCA 001003965 1
• AAI clade 52 medoid: asm GCA 900315795 1
• AAI clade 53 medoid: asm GCA 002782265 1
• AAI clade 54 medoid: asm GCA 002506275 1
• AAI clade 55 medoid: asm GCA 002501805 1
• AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
• AAI clade 57 medoid: asm GCA 002362915 1
• AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
• AAI clade 59 medoid: asm GCA 002478295 1
• AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
• AAI clade 61 medoid: asm GCA 002373045 1
• AAI clade 62 medoid: gb PLQF00000000
• AAI clade 63 medoid: asm GCA 002352835 1
• AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
• AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
• AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
• AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
• AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
• AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
• AAI clade 70 medoid: asm GCA 002369075 1
• AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
• AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
• AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
• AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
• AAI clade 75 medoid: asm GCA 002294525 1
• AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
• AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
• AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
• AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
• AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
• AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
• AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
• AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
• AAI clade 84 medoid: asm GCA 003020965 1
• AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
• AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
• AAI clade 87 medoid: asm GCA 001701225 1
• AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
• AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
• AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
• AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
• AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
• AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1