AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 34-1
medoid: asm GCA 001604005 1
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AAI clade 34-2
medoid: miga PS19A XieH 2016 YSZC12003 37138 bin 67
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AAI clade 34-3
medoid: asm GCA 002305955 1
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AAI clade 34-4
medoid: asm GCA 900152565 1
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AAI clade 34-5
medoid: asm GCA 002435675 1
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AAI clade 34-6
medoid: asm GCA 002359915 1
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AAI clade 34-7
medoid: asm GCA 002409445 1
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AAI clade 34-8
medoid: asm GCA 002299965 1
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AAI clade 34-9
medoid: asm GCA 001795415 1
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AAI clade 34-10
medoid: asm GCA 002310055 1
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AAI clade 34-11
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES17 bin 94
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AAI clade 34-12
medoid: miga SW19B 10677 0002 idba bin 62
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AAI clade 34-13
medoid: miga PS19A LiuW 2016 SRR3993050 bin 68
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AAI clade 34-14
medoid: asm GCA 002305155 1
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AAI clade 34-15
medoid: miga PS19A RaymondF 2016 P2E0 bin 75
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AAI clade 34-16
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES18 bin 21
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AAI clade 34-17
medoid: asm GCA 002438075 1
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AAI clade 34-18
medoid: asm GCA 002314595 1
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AAI clade 34-19
medoid: miga PS19A CosteaPI 2017 alien2 11 0 0 bin 33
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AAI clade 34-20
medoid: asm GCA 002375855 1
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AAI clade 34-21
medoid: miga SW19B 10676 min2k bin 3663
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AAI clade 34-22
medoid: asm GCA 002405565 1
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AAI clade 34-23
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES10 bin 136
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AAI clade 34-24
medoid: miga PS19A LeChatelierE 2013 MH0448 bin 60
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AAI clade 34-25
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES9 bin 61
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AAI clade 34-26
medoid: asm GCA 002315315 1
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AAI clade 34-27
medoid: asm GCA 002396645 1
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AAI clade 34-28
medoid: asm GCA 001512945 1
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AAI clade 34-29
medoid: miga BA16A 35 5E
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AAI clade 34-30
medoid: asm GCA 002431635 1
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AAI clade 34-31
medoid: miga PS19A Obregon TitoAJ 2015 SM33 bin 35
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AAI clade 34-32
medoid: miga SW19B 10676 0017 idba bin 83
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AAI clade 34-32-1
medoid: miga PS19A BritoIL 2016 W2 36 ST bin 40
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AAI clade 34-32-2
medoid: miga SW19B 10676 0017 idba bin 83
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AAI clade 34-32-3
medoid: miga SW19B 10677 0038 idba bin 33
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AAI clade 34-32-4
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES19 bin 93
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AAI clade 34-32-5
medoid: miga PS19A BritoIL 2016 W2 8 ST bin 2
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AAI clade 34-32-1
medoid: miga PS19A BritoIL 2016 W2 36 ST bin 40
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AAI clade 34-33
medoid: miga SW19B 10675 0043 idba bin 83
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AAI clade 34-34
medoid: miga PS19A LiJ 2014 O2 UC47 1 bin 33
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AAI clade 34-35
medoid: miga SW19B 10677 0047 idba bin 22
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AAI clade 34-36
medoid: miga SW19B 10674 min2k bin 2843
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AAI clade 34-37
medoid: miga PS19A ZellerG 2014 CCIS24254057ST 4 0 bin 56
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AAI clade 34-38
medoid: miga PS19A RaymondF 2016 P19E7 bin 33
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AAI clade 34-39
medoid: miga SW19B 10677 0030 idba bin 100
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AAI clade 34-40
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES21 bin 95
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AAI clade 34-41
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 124
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AAI clade 34-42
medoid: miga PS19A Obregon TitoAJ 2015 NO10 bin 10
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AAI clade 34-43
medoid: asm GCA 002371985 1
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AAI clade 34-44
medoid: miga PS19A CosteaPI 2017 SID713A004 11 90 0 bin 51
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AAI clade 34-45
medoid: asm GCA 002314305 1
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AAI clade 34-46
medoid: asm GCA 002490425 1
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AAI clade 34-47
medoid: miga PS19A XieH 2016 YSZC12003 37233 bin 91
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AAI clade 34-48
medoid: miga PS19A LiJ 2014 V1 UC58 4 bin 44
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AAI clade 34-49
medoid: miga SW19B 10677 0029 idba bin 32
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AAI clade 34-50
medoid: miga PS19A CosteaPI 2017 SID713B003 11 90 0 bin 40
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AAI clade 34-51
medoid: miga PS19A XieH 2016 YSZC12003 36666 bin 64
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AAI clade 34-52
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES9 bin 63
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AAI clade 34-53
medoid: miga PS19A XieH 2016 YSZC12003 36033 bin 83
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AAI clade 34-54
medoid: asm GCA 002366995 1
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AAI clade 34-55
medoid: miga PS19A XieH 2016 YSZC12003 36695 bin 67
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AAI clade 34-56
medoid: miga PS19A LiJ 2017 H2M614904 bin 35
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AAI clade 34-57
medoid: miga PS19A XieH 2016 YSZC12003 35980 bin 38
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AAI clade 34-58
medoid: miga SW19B 10677 0017 idba bin 100
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AAI clade 34-59
medoid: miga SW19B 10678 min2k bin 140
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AAI clade 34-60
medoid: asm GCA 003645735 1
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AAI clade 34-61
medoid: miga DE18A TARA RED MAG 00113
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AAI clade 34-62
medoid: miga SW19B 10676 0046 idba bin 44
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AAI clade 34-63
medoid: miga SW19B 10675 0018 idba bin 25
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AAI clade 34-64
medoid: miga PS19A XieH 2016 YSZC12003 37173 bin 53
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AAI clade 34-65
medoid: miga SW19B 10676 min2k bin 1744
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AAI clade 34-66
medoid: miga SW19B 10674 min2k bin 2794
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AAI clade 34-67
medoid: miga SW19B 10677 min2k bin 4437
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AAI clade 34-68
medoid: miga PS19A LeChatelierE 2013 MH0197 bin 40
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AAI clade 34-69
medoid: miga SW19B 10677 0005 idba bin 52
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AAI clade 34-70
medoid: miga PS19A Obregon TitoAJ 2015 SM33 bin 4
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AAI clade 34-71
medoid: miga SW19B 10674 0004 idba bin 200
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AAI clade 34-72
medoid: miga SW19B 10676 0036 idba bin 147
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AAI clade 34-73
medoid: miga SW19B 10677 min2k bin 3364
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AAI clade 34-74
medoid: miga SW19B 10677 0034 idba bin 100
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AAI clade 34-75
medoid: miga SW19B 10675 0046 idba bin 44
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AAI clade 34-76
medoid: miga PS19A HMP 2012 SRS048870 bin 1
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AAI clade 34-77
medoid: miga PS19A XieH 2016 YSZC12003 36049 bin 90
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AAI clade 34-78
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES11 bin 48
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AAI clade 34-79
medoid: miga PS19A HMP 2012 SRS011302 bin 37
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AAI clade 34-80
medoid: miga PS19A RaymondF 2016 P23C90 bin 19
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AAI clade 34-81
medoid: miga PS19A GeversD 2014 SKBSTL018 bin 28
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AAI clade 34-82
medoid: miga PS19A CosteaPI 2017 SID713A004 11 0 0 bin 84
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AAI clade 34-83
medoid: miga PS19A XieH 2016 YSZC12003 37102 bin 118
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AAI clade 34-84
medoid: miga PS19A CosteaPI 2017 pluto1 11 7 0 bin 37
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AAI clade 34-85
medoid: miga PS19A XieH 2016 YSZC12003 37337 bin 28
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AAI clade 34-86
medoid: miga PS19A BritoIL 2016 W3 22 ST bin 85
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AAI clade 34-87
medoid: miga PS19A LiJ 2017 H3M517925 bin 8
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AAI clade 34-88
medoid: miga PS19A VogtmannE 2016 MMRS64281211ST 27 0 0 bin 22
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AAI clade 34-89
medoid: miga PS19A VincentC 2016 MM064 1 megahit bin 9
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AAI clade 34-90
medoid: miga PS19A LiJ 2017 H2F514923 bin 19
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AAI clade 34-91
medoid: miga PS19A RaymondF 2016 P19E7 bin 62
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AAI clade 34-92
medoid: miga PS19A XieH 2016 YSZC12003 37097 bin 75
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AAI clade 34-93
medoid: miga PS19A LiuW 2016 SRR3993059 bin 6
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AAI clade 34-94
medoid: miga PS19A XieH 2016 YSZC12003 36052 bin 91
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AAI clade 34-95
medoid: miga PS19A OhJ 2014 MET0119 bin 18
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AAI clade 34-96
medoid: miga PS19A QinJ 2012 DOM015 bin 4
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AAI clade 34-97
medoid: miga PS19A VincentC 2016 MM002 2 megahit bin 11
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AAI clade 34-98
medoid: miga PS19A VincentC 2016 MM058 1 megahit bin 6
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AAI clade 34-99
medoid: miga PS19A XieH 2016 YSZC12003 36695 bin 15
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AAI clade 34-100
medoid: miga PS19A XieH 2016 YSZC12003 36696 bin 84
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AAI clade 34-1
medoid: asm GCA 001604005 1
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1