AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: asm GCA 900155255 1
  • AAI clade 2 medoid: asm GCA 003225555 1
  • AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
  • AAI clade 4 medoid: miga BA16A LX33 339
  • AAI clade 5 medoid: asm GCA 002344625 1
  • AAI clade 6 medoid: miga ZQ19A BG 240
  • AAI clade 7 medoid: asm GCA 003220495 1
  • AAI clade 8 medoid: asm GCA 001768045 1
  • AAI clade 9 medoid: miga ZQ19A BG 239
  • AAI clade 10 medoid: asm GCA 002508675 1
  • AAI clade 11 medoid: miga PU18A 2609459660
  • AAI clade 12 medoid: asm GCA 003662385 1
  • AAI clade 13 medoid: asm GCA 002869845 2
  • AAI clade 14 medoid: miga ZQ19A BG 334
  • AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
  • AAI clade 16 medoid: asm GCA 003218215 1
  • AAI clade 17 medoid: gb PMWP00000000
  • AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
  • AAI clade 19 medoid: miga ZQ19A BG 192
  • AAI clade 20 medoid: asm GCA 003222055 1
  • AAI clade 21 medoid: asm GCA 002304435 1
  • AAI clade 22 medoid: gb PMOA00000000
  • AAI clade 23 medoid: asm GCA 001180165 1
  • AAI clade 24 medoid: asm GCA 900155275 1
  • AAI clade 25 medoid: asm GCA 003562785 1
    • AAI clade 25-1 medoid: asm GCA 002424175 1
    • AAI clade 25-2 medoid: asm GCA 001508035 1
      • AAI clade 25-2-1 medoid: asm GCA 001508035 1
        • AAI clade 25-2-1-1 medoid: asm GCA 001508035 1
        • AAI clade 25-2-1-2 medoid: asm GCA 003050565 1
      • AAI clade 25-2-2 medoid: asm GCA 001768645 1
      • AAI clade 25-2-3 medoid: miga CB19A Bin 13
    • AAI clade 25-3 medoid: asm GCA 001723995 1
    • AAI clade 25-4 medoid: asm GCA 002410425 1
    • AAI clade 25-5 medoid: asm GCA 002346645 1
    • AAI clade 25-6 medoid: asm GCA 001508895 1
    • AAI clade 25-7 medoid: asm GCA 004367405 1
    • AAI clade 25-8 medoid: asm GCA 004367355 1
    • AAI clade 25-9 medoid: asm GCA 002500965 1
    • AAI clade 25-10 medoid: asm GCA 002325605 1
    • AAI clade 25-11 medoid: asm GCA 003670735 1
    • AAI clade 25-12 medoid: asm GCA 003670505 1
    • AAI clade 25-13 medoid: miga SS18B METABAT VerySpecific 593
    • AAI clade 25-14 medoid: asm GCA 003669425 1
    • AAI clade 25-15 medoid: asm GCA 002816375 1
    • AAI clade 25-16 medoid: asm GCA 002817135 1
    • AAI clade 25-17 medoid: asm GCA 002431715 1
    • AAI clade 25-18 medoid: gb PKWS00000000
    • AAI clade 25-19 medoid: asm GCA 001508555 1
    • AAI clade 25-20 medoid: asm GCF 000174415 1
    • AAI clade 25-21 medoid: asm GCA 001795235 1
    • AAI clade 25-22 medoid: asm GCA 001509155 1
    • AAI clade 25-23 medoid: asm GCA 002428295 1
    • AAI clade 25-24 medoid: asm GCA 002294665 1
    • AAI clade 25-25 medoid: gb APKF00000000
    • AAI clade 25-26 medoid: gb AQYX00000000
    • AAI clade 25-27 medoid: asm GCA 001509265 1
    • AAI clade 25-28 medoid: asm GCA 001919605 1
    • AAI clade 25-29 medoid: gb PNAZ00000000
    • AAI clade 25-30 medoid: gb PNAN00000000
    • AAI clade 25-31 medoid: asm GCA 002345135 1
    • AAI clade 25-32 medoid: asm GCA 001796525 1
    • AAI clade 25-33 medoid: miga DE18A TARA PON MAG 00043
    • AAI clade 25-34 medoid: asm GCA 002421445 1
    • AAI clade 25-35 medoid: miga DE18A TARA RED MAG 00014
    • AAI clade 25-36 medoid: asm GCA 002385365 1
    • AAI clade 25-37 medoid: asm GCA 002423065 1
    • AAI clade 25-38 medoid: asm GCA 002292025 1
    • AAI clade 25-39 medoid: asm GCA 002397915 1
    • AAI clade 25-40 medoid: asm GCA 003553895 1
    • AAI clade 25-41 medoid: asm GCA 002385995 1
    • AAI clade 25-42 medoid: asm GCA 002399235 1
    • AAI clade 25-43 medoid: asm GCA 002421505 1
    • AAI clade 25-44 medoid: asm GCA 002427015 1
    • AAI clade 25-45 medoid: asm GCA 001512905 1
    • AAI clade 25-46 medoid: miga SS18A Bin 4 3 contigs
    • AAI clade 25-47 medoid: asm GCA 002452585 1
    • AAI clade 25-48 medoid: asm GCA 002305915 1
    • AAI clade 25-49 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES46 bin 63
    • AAI clade 25-50 medoid: asm GCA 002407935 1
    • AAI clade 25-51 medoid: asm GCA 002419055 1
    • AAI clade 25-52 medoid: asm GCA 001515265 1
    • AAI clade 25-53 medoid: miga SW19B 10677 min2k bin 3327
    • AAI clade 25-54 medoid: asm GCA 001513155 1
    • AAI clade 25-55 medoid: asm GCA 001512575 1
    • AAI clade 25-56 medoid: asm GCA 002426545 1
    • AAI clade 25-57 medoid: asm GCA 003553655 1
    • AAI clade 25-58 medoid: asm GCA 002435745 1
    • AAI clade 25-59 medoid: asm GCA 002423485 1
    • AAI clade 25-60 medoid: asm GCA 001776195 1
    • AAI clade 25-61 medoid: asm GCA 001783275 1
    • AAI clade 25-62 medoid: asm GCA 004376985 1
    • AAI clade 25-63 medoid: asm GCA 004377205 1
    • AAI clade 25-64 medoid: asm GCA 001771615 1
    • AAI clade 25-65 medoid: asm GCA 003561325 1
    • AAI clade 25-66 medoid: gb PMYG00000000
    • AAI clade 25-67 medoid: asm GCA 002785325 1
    • AAI clade 25-68 medoid: asm GCA 002780095 1
    • AAI clade 25-69 medoid: asm GCA 003023625 1
    • AAI clade 25-70 medoid: asm GCA 003648815 1
    • AAI clade 25-71 medoid: asm GCA 003568075 1
    • AAI clade 25-72 medoid: asm GCA 003551385 1
    • AAI clade 25-73 medoid: asm GCA 003552765 1
    • AAI clade 25-74 medoid: asm GCA 003566315 1
    • AAI clade 25-75 medoid: asm GCA 003563315 1
    • AAI clade 25-76 medoid: asm GCA 003562655 1
    • AAI clade 25-77 medoid: asm GCA 003552525 1
    • AAI clade 25-78 medoid: asm GCA 003554565 1
    • AAI clade 25-79 medoid: asm GCA 003565975 1
    • AAI clade 25-80 medoid: asm GCA 003559095 1
    • AAI clade 25-81 medoid: asm GCA 003564415 1
    • AAI clade 25-82 medoid: asm GCA 003552825 1
    • AAI clade 25-83 medoid: asm GCA 003562295 1
    • AAI clade 25-84 medoid: asm GCA 003553635 1
    • AAI clade 25-85 medoid: asm GCA 003550525 1
    • AAI clade 25-86 medoid: asm GCA 002049785 1
    • AAI clade 25-87 medoid: asm GCA 002084985 1
    • AAI clade 25-88 medoid: asm GCA 002085025 1
    • AAI clade 25-89 medoid: asm GCA 002779525 1
    • AAI clade 25-90 medoid: gb PKYJ00000000
    • AAI clade 25-91 medoid: miga SS18B METABAT VerySpecific 155
    • AAI clade 25-92 medoid: gb PKYB00000000
    • AAI clade 25-93 medoid: gb PMXQ00000000
    • AAI clade 25-94 medoid: gb PMZA00000000
    • AAI clade 25-95 medoid: miga WB18A mgm4762922 3 050 upload
    • AAI clade 25-96 medoid: miga SS18B METABAT VerySpecific 377
    • AAI clade 25-97 medoid: miga PS19A FerrettiP 2018 CA C10031MS2526FE t0M15 bin 48
    • AAI clade 25-98 medoid: asm GCA 003173975 1
    • AAI clade 25-99 medoid: asm GCA 002771935 1
    • AAI clade 25-100 medoid: asm GCA 002774005 1
  • AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
  • AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
  • AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
  • AAI clade 29 medoid: asm GCA 900317055 1
  • AAI clade 30 medoid: gb MERW00000000
  • AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
  • AAI clade 32 medoid: asm GCA 002320005 1
  • AAI clade 33 medoid: asm GCA 900318825 1
  • AAI clade 34 medoid: miga BA16A 35 5E
  • AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
  • AAI clade 36 medoid: asm GCA 001604115 1
  • AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
  • AAI clade 38 medoid: miga BA16A 35 12A
  • AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
  • AAI clade 40 medoid: asm GCA 002372655 1
  • AAI clade 41 medoid: miga ZQ19A BG 670
  • AAI clade 42 medoid: asm GCA 002732585 1
  • AAI clade 43 medoid: gb MFTG00000000
  • AAI clade 44 medoid: asm GCF 000217915 1
  • AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
  • AAI clade 46 medoid: asm GCA 005503595 1
  • AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
  • AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
  • AAI clade 49 medoid: asm GCA 002787475 1
  • AAI clade 50 medoid: asm GCA 002411275 1
  • AAI clade 51 medoid: asm GCA 001003965 1
  • AAI clade 52 medoid: asm GCA 900315795 1
  • AAI clade 53 medoid: asm GCA 002782265 1
  • AAI clade 54 medoid: asm GCA 002506275 1
  • AAI clade 55 medoid: asm GCA 002501805 1
  • AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
  • AAI clade 57 medoid: asm GCA 002362915 1
  • AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
  • AAI clade 59 medoid: asm GCA 002478295 1
  • AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
  • AAI clade 61 medoid: asm GCA 002373045 1
  • AAI clade 62 medoid: gb PLQF00000000
  • AAI clade 63 medoid: asm GCA 002352835 1
  • AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
  • AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
  • AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
  • AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
  • AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
  • AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
  • AAI clade 70 medoid: asm GCA 002369075 1
  • AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
  • AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
  • AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
  • AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
  • AAI clade 75 medoid: asm GCA 002294525 1
  • AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
  • AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
  • AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
  • AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
  • AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
  • AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
  • AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
  • AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
  • AAI clade 84 medoid: asm GCA 003020965 1
  • AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
  • AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
  • AAI clade 87 medoid: asm GCA 001701225 1
  • AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
  • AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
  • AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
  • AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
  • AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
  • AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1