AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 25-1
medoid: asm GCA 002424175 1
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AAI clade 25-2
medoid: asm GCA 001508035 1
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AAI clade 25-3
medoid: asm GCA 001723995 1
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AAI clade 25-4
medoid: asm GCA 002410425 1
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AAI clade 25-5
medoid: asm GCA 002346645 1
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AAI clade 25-6
medoid: asm GCA 001508895 1
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AAI clade 25-7
medoid: asm GCA 004367405 1
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AAI clade 25-8
medoid: asm GCA 004367355 1
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AAI clade 25-9
medoid: asm GCA 002500965 1
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AAI clade 25-10
medoid: asm GCA 002325605 1
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AAI clade 25-11
medoid: asm GCA 003670735 1
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AAI clade 25-12
medoid: asm GCA 003670505 1
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AAI clade 25-13
medoid: miga SS18B METABAT VerySpecific 593
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AAI clade 25-14
medoid: asm GCA 003669425 1
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AAI clade 25-15
medoid: asm GCA 002816375 1
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AAI clade 25-16
medoid: asm GCA 002817135 1
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AAI clade 25-17
medoid: asm GCA 002431715 1
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AAI clade 25-18
medoid: gb PKWS00000000
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AAI clade 25-19
medoid: asm GCA 001508555 1
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AAI clade 25-20
medoid: asm GCF 000174415 1
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AAI clade 25-21
medoid: asm GCA 001795235 1
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AAI clade 25-22
medoid: asm GCA 001509155 1
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AAI clade 25-23
medoid: asm GCA 002428295 1
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AAI clade 25-24
medoid: asm GCA 002294665 1
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AAI clade 25-25
medoid: gb APKF00000000
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AAI clade 25-26
medoid: gb AQYX00000000
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AAI clade 25-27
medoid: asm GCA 001509265 1
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AAI clade 25-28
medoid: asm GCA 001919605 1
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AAI clade 25-29
medoid: gb PNAZ00000000
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AAI clade 25-30
medoid: gb PNAN00000000
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AAI clade 25-31
medoid: asm GCA 002345135 1
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AAI clade 25-32
medoid: asm GCA 001796525 1
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AAI clade 25-33
medoid: miga DE18A TARA PON MAG 00043
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AAI clade 25-34
medoid: asm GCA 002421445 1
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AAI clade 25-35
medoid: miga DE18A TARA RED MAG 00014
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AAI clade 25-36
medoid: asm GCA 002385365 1
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AAI clade 25-37
medoid: asm GCA 002423065 1
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AAI clade 25-38
medoid: asm GCA 002292025 1
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AAI clade 25-39
medoid: asm GCA 002397915 1
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AAI clade 25-40
medoid: asm GCA 003553895 1
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AAI clade 25-41
medoid: asm GCA 002385995 1
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AAI clade 25-42
medoid: asm GCA 002399235 1
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AAI clade 25-43
medoid: asm GCA 002421505 1
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AAI clade 25-44
medoid: asm GCA 002427015 1
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AAI clade 25-45
medoid: asm GCA 001512905 1
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AAI clade 25-46
medoid: miga SS18A Bin 4 3 contigs
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AAI clade 25-47
medoid: asm GCA 002452585 1
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AAI clade 25-48
medoid: asm GCA 002305915 1
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AAI clade 25-49
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES46 bin 63
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AAI clade 25-50
medoid: asm GCA 002407935 1
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AAI clade 25-51
medoid: asm GCA 002419055 1
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AAI clade 25-52
medoid: asm GCA 001515265 1
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AAI clade 25-53
medoid: miga SW19B 10677 min2k bin 3327
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AAI clade 25-54
medoid: asm GCA 001513155 1
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AAI clade 25-55
medoid: asm GCA 001512575 1
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AAI clade 25-56
medoid: asm GCA 002426545 1
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AAI clade 25-57
medoid: asm GCA 003553655 1
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AAI clade 25-58
medoid: asm GCA 002435745 1
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AAI clade 25-59
medoid: asm GCA 002423485 1
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AAI clade 25-60
medoid: asm GCA 001776195 1
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AAI clade 25-61
medoid: asm GCA 001783275 1
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AAI clade 25-62
medoid: asm GCA 004376985 1
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AAI clade 25-63
medoid: asm GCA 004377205 1
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AAI clade 25-64
medoid: asm GCA 001771615 1
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AAI clade 25-65
medoid: asm GCA 003561325 1
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AAI clade 25-66
medoid: gb PMYG00000000
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AAI clade 25-67
medoid: asm GCA 002785325 1
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AAI clade 25-68
medoid: asm GCA 002780095 1
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AAI clade 25-69
medoid: asm GCA 003023625 1
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AAI clade 25-70
medoid: asm GCA 003648815 1
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AAI clade 25-71
medoid: asm GCA 003568075 1
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AAI clade 25-72
medoid: asm GCA 003551385 1
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AAI clade 25-73
medoid: asm GCA 003552765 1
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AAI clade 25-74
medoid: asm GCA 003566315 1
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AAI clade 25-75
medoid: asm GCA 003563315 1
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AAI clade 25-76
medoid: asm GCA 003562655 1
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AAI clade 25-77
medoid: asm GCA 003552525 1
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AAI clade 25-78
medoid: asm GCA 003554565 1
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AAI clade 25-79
medoid: asm GCA 003565975 1
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AAI clade 25-80
medoid: asm GCA 003559095 1
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AAI clade 25-81
medoid: asm GCA 003564415 1
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AAI clade 25-82
medoid: asm GCA 003552825 1
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AAI clade 25-83
medoid: asm GCA 003562295 1
6 datasets: asm GCA 003551905 1 (AAI: 52.28%), asm GCA 003551665 1 (AAI: 69.93%), asm GCA 003550445 1 (AAI: 71.02%), asm GCA 003550965 1 (AAI: 64.25%), asm GCA 003554585 1 (AAI: 75.27%), and asm GCA 003562295 1 (AAI: 100.0%)
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AAI clade 25-84
medoid: asm GCA 003553635 1
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AAI clade 25-85
medoid: asm GCA 003550525 1
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AAI clade 25-86
medoid: asm GCA 002049785 1
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AAI clade 25-87
medoid: asm GCA 002084985 1
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AAI clade 25-88
medoid: asm GCA 002085025 1
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AAI clade 25-89
medoid: asm GCA 002779525 1
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AAI clade 25-90
medoid: gb PKYJ00000000
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AAI clade 25-91
medoid: miga SS18B METABAT VerySpecific 155
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AAI clade 25-92
medoid: gb PKYB00000000
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AAI clade 25-93
medoid: gb PMXQ00000000
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AAI clade 25-94
medoid: gb PMZA00000000
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AAI clade 25-95
medoid: miga WB18A mgm4762922 3 050 upload
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AAI clade 25-96
medoid: miga SS18B METABAT VerySpecific 377
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AAI clade 25-97
medoid: miga PS19A FerrettiP 2018 CA C10031MS2526FE t0M15 bin 48
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AAI clade 25-98
medoid: asm GCA 003173975 1
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AAI clade 25-99
medoid: asm GCA 002771935 1
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AAI clade 25-100
medoid: asm GCA 002774005 1
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AAI clade 25-1
medoid: asm GCA 002424175 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1