AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 1-1
medoid: asm GCA 003222455 1
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AAI clade 1-2
medoid: asm GCA 900155255 1
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AAI clade 1-3
medoid: asm GCA 002771665 1
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AAI clade 1-4
medoid: asm GCA 002868985 1
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AAI clade 1-5
medoid: asm GCA 003646895 1
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AAI clade 1-6
medoid: miga WD15A P1181 101 37
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AAI clade 1-7
medoid: asm GCF 000007985 2
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AAI clade 1-8
medoid: asm GCF 000013385 1
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AAI clade 1-9
medoid: asm GCA 001830135 1
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AAI clade 1-10
medoid: asm GCF 000025725 1
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AAI clade 1-11
medoid: miga PS19A CM periimplantitis SP 264SPI T016 bin 10
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AAI clade 1-12
medoid: gb PLSV00000000
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AAI clade 1-13
medoid: asm GCA 002412715 1
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AAI clade 1-14
medoid: gb PMZH00000000
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AAI clade 1-15
medoid: asm GCA 001542995 1
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AAI clade 1-16
medoid: asm GCA 900491205 1
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AAI clade 1-17
medoid: asm GCA 002898135 1
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AAI clade 1-18
medoid: asm GCA 001805005 1
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AAI clade 1-19
medoid: asm GCA 001805565 1
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AAI clade 1-20
medoid: asm GCA 002347095 1
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AAI clade 1-21
medoid: asm GCA 001795535 1
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AAI clade 1-22
medoid: asm GCA 001803975 1
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AAI clade 1-23
medoid: asm GCA 002772785 1
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AAI clade 1-24
medoid: miga SS18A Bin 39 2 contigs
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AAI clade 1-25
medoid: asm GCA 001797445 1
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AAI clade 1-26
medoid: miga WD15A P1181 103 1
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AAI clade 1-27
medoid: miga SS18B METABAT VerySpecific 243
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AAI clade 1-28
medoid: miga SS18A Bin 29 2 contigs
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AAI clade 1-29
medoid: asm GCA 002500485 1
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AAI clade 1-30
medoid: asm GCA 002817235 1
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AAI clade 1-31
medoid: asm GCA 004213005 1
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AAI clade 1-32
medoid: gb PKYI00000000
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AAI clade 1-33
medoid: asm GCA 003104975 1
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AAI clade 1-34
medoid: asm GCA 003978875 1
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AAI clade 1-35
medoid: miga DE18A TARA RED MAG 00030
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AAI clade 1-36
medoid: asm GCA 003641645 1
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AAI clade 1-37
medoid: asm GCA 002367355 1
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AAI clade 1-38
medoid: asm GCA 002424645 1
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AAI clade 1-39
medoid: asm GCA 002753215 1
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AAI clade 1-40
medoid: asm GCA 002753455 1
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AAI clade 1-41
medoid: asm GCA 003599365 1
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AAI clade 1-42
medoid: asm GCA 003635255 1
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AAI clade 1-43
medoid: asm GCA 001799045 1
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AAI clade 1-44
medoid: miga DE18A TARA PON MAG 00040
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AAI clade 1-45
medoid: asm GCA 003223695 1
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AAI clade 1-46
medoid: asm GCA 900069895 1
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AAI clade 1-47
medoid: gb MEQD00000000
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AAI clade 1-48
medoid: asm GCA 002436015 1
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AAI clade 1-49
medoid: asm GCF 000020725 1
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AAI clade 1-50
medoid: miga AP18A bin 10
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AAI clade 1-51
medoid: asm GCF 000428885 1
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AAI clade 1-52
medoid: asm GCA 003647035 1
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AAI clade 1-53
medoid: asm GCA 003599105 1
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AAI clade 1-54
medoid: asm GCA 003644665 1
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AAI clade 1-55
medoid: asm GCA 004377305 1
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AAI clade 1-56
medoid: asm GCA 002345205 1
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AAI clade 1-57
medoid: gb ASPL00000000
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AAI clade 1-58
medoid: asm GCA 001773925 1
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AAI clade 1-59
medoid: asm GCA 001804005 1
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AAI clade 1-60
medoid: asm GCA 002441245 1
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AAI clade 1-61
medoid: asm GCA 001464455 1
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AAI clade 1-62
medoid: asm GCA 002345525 1
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AAI clade 1-63
medoid: miga DE18A TARA ASW MAG 00020
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AAI clade 1-64
medoid: asm GCA 003567075 1
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AAI clade 1-65
medoid: asm GCA 002779455 1
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AAI clade 1-66
medoid: gb MGSZ00000000
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AAI clade 1-67
medoid: miga PS19A RaymondF 2016 P1E0 bin 62
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AAI clade 1-68
medoid: miga PS19A GeversD 2014 SKBSTL067 bin 21
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AAI clade 1-69
medoid: asm GCA 001800605 1
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AAI clade 1-70
medoid: miga PS19A ZeeviD 2015 PNP Main 706 megahit bin 52
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AAI clade 1-71
medoid: miga SW19B 10677 0052 idba bin 148
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AAI clade 1-72
medoid: miga PS19A HMP 2012 SRS017227 bin 40
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AAI clade 1-73
medoid: gb PLHE00000000
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AAI clade 1-73-1
medoid: asm GCA 002382135 1
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AAI clade 1-73-2
medoid: asm GCA 001797845 1
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AAI clade 1-73-3
medoid: gb JQIE00000000
4 datasets: asm GCA 002304995 1 (AAI: 67.12%), asm GCA 002347685 1 (AAI: 64.4%), asm GCA 002382045 1 (AAI: 70.53%), and gb JQIE00000000 (AAI: 100.0%)
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AAI clade 1-73-4
medoid: asm GCA 002478265 1
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AAI clade 1-73-5
medoid: asm GCA 002441205 1
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AAI clade 1-73-6
medoid: gb PLHE00000000
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AAI clade 1-73-7
medoid: gb PMAX00000000
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AAI clade 1-73-8
medoid: gb PLMQ00000000
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AAI clade 1-73-1
medoid: asm GCA 002382135 1
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AAI clade 1-74
medoid: miga PS19A HeQ 2017 RSZAXPI003104 142 bin 42
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AAI clade 1-75
medoid: miga PS19A HeQ 2017 RSZAXPI003062 102 bin 10
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AAI clade 1-76
medoid: asm GCA 002780715 1
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AAI clade 1-77
medoid: gb PLMY00000000
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AAI clade 1-78
medoid: asm GCA 001777915 1
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AAI clade 1-79
medoid: asm GCA 002311805 1
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AAI clade 1-80
medoid: miga TJ18A OLLG01
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AAI clade 1-81
medoid: miga SW19B 10676 0004 idba bin 50
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AAI clade 1-82
medoid: miga DE18A TARA MED MAG 00069
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AAI clade 1-83
medoid: asm GCA 002441125 1
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AAI clade 1-84
medoid: miga SS18B METABAT VerySpecific 233
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AAI clade 1-85
medoid: asm GCA 001778355 1
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AAI clade 1-86
medoid: asm GCA 003643855 1
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AAI clade 1-87
medoid: asm GCA 003838035 1
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AAI clade 1-88
medoid: miga DE18A TARA PON MAG 00081
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AAI clade 1-89
medoid: asm GCA 004376485 1
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AAI clade 1-90
medoid: asm GCA 004376765 1
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AAI clade 1-91
medoid: asm GCA 003644465 1
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AAI clade 1-92
medoid: asm GCA 003568005 1
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AAI clade 1-93
medoid: gb PMOL00000000
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AAI clade 1-94
medoid: gb PLNW00000000
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AAI clade 1-95
medoid: gb PMTQ00000000
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AAI clade 1-96
medoid: miga TJ18A OLLS01
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AAI clade 1-97
medoid: miga PS19A WenC 2017 RA056 bin 65
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AAI clade 1-1
medoid: asm GCA 003222455 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1