AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: asm GCA 900155255 1
    • AAI clade 1-1 medoid: asm GCA 003222455 1
    • AAI clade 1-2 medoid: asm GCA 900155255 1
    • AAI clade 1-3 medoid: asm GCA 002771665 1
      • AAI clade 1-3-1 medoid: asm GCA 002440825 1
      • AAI clade 1-3-2 medoid: asm GCA 002435175 1
      • AAI clade 1-3-3 medoid: asm GCA 002323535 1
      • AAI clade 1-3-4 medoid: asm GCA 002366565 1
      • AAI clade 1-3-5 medoid: asm GCA 002422605 1
      • AAI clade 1-3-6 medoid: asm GCA 002771665 1
      • AAI clade 1-3-7 medoid: asm GCA 002435795 1
      • AAI clade 1-3-8 medoid: asm GCA 002435165 1
      • AAI clade 1-3-9 medoid: miga DE18A TARA ION MAG 00064
      • AAI clade 1-3-10 medoid: asm GCA 002338505 1
      • AAI clade 1-3-11 medoid: asm GCA 001769855 1
      • AAI clade 1-3-12 medoid: asm GCA 001769995 1
      • AAI clade 1-3-13 medoid: asm GCA 001770035 1
      • AAI clade 1-3-14 medoid: asm GCA 003650085 1
      • AAI clade 1-3-15 medoid: asm GCA 002786715 1
    • AAI clade 1-4 medoid: asm GCA 002868985 1
    • AAI clade 1-5 medoid: asm GCA 003646895 1
    • AAI clade 1-6 medoid: miga WD15A P1181 101 37
    • AAI clade 1-7 medoid: asm GCF 000007985 2
    • AAI clade 1-8 medoid: asm GCF 000013385 1
    • AAI clade 1-9 medoid: asm GCA 001830135 1
    • AAI clade 1-10 medoid: asm GCF 000025725 1
    • AAI clade 1-11 medoid: miga PS19A CM periimplantitis SP 264SPI T016 bin 10
    • AAI clade 1-12 medoid: gb PLSV00000000
    • AAI clade 1-13 medoid: asm GCA 002412715 1
    • AAI clade 1-14 medoid: gb PMZH00000000
    • AAI clade 1-15 medoid: asm GCA 001542995 1
    • AAI clade 1-16 medoid: asm GCA 900491205 1
    • AAI clade 1-17 medoid: asm GCA 002898135 1
    • AAI clade 1-18 medoid: asm GCA 001805005 1
    • AAI clade 1-19 medoid: asm GCA 001805565 1
    • AAI clade 1-20 medoid: asm GCA 002347095 1
    • AAI clade 1-21 medoid: asm GCA 001795535 1
    • AAI clade 1-22 medoid: asm GCA 001803975 1
    • AAI clade 1-23 medoid: asm GCA 002772785 1
    • AAI clade 1-24 medoid: miga SS18A Bin 39 2 contigs
    • AAI clade 1-25 medoid: asm GCA 001797445 1
    • AAI clade 1-26 medoid: miga WD15A P1181 103 1
    • AAI clade 1-27 medoid: miga SS18B METABAT VerySpecific 243
    • AAI clade 1-28 medoid: miga SS18A Bin 29 2 contigs
    • AAI clade 1-29 medoid: asm GCA 002500485 1
    • AAI clade 1-30 medoid: asm GCA 002817235 1
    • AAI clade 1-31 medoid: asm GCA 004213005 1
    • AAI clade 1-32 medoid: gb PKYI00000000
    • AAI clade 1-33 medoid: asm GCA 003104975 1
    • AAI clade 1-34 medoid: asm GCA 003978875 1
    • AAI clade 1-35 medoid: miga DE18A TARA RED MAG 00030
    • AAI clade 1-36 medoid: asm GCA 003641645 1
    • AAI clade 1-37 medoid: asm GCA 002367355 1
    • AAI clade 1-38 medoid: asm GCA 002424645 1
    • AAI clade 1-39 medoid: asm GCA 002753215 1
    • AAI clade 1-40 medoid: asm GCA 002753455 1
    • AAI clade 1-41 medoid: asm GCA 003599365 1
    • AAI clade 1-42 medoid: asm GCA 003635255 1
    • AAI clade 1-43 medoid: asm GCA 001799045 1
    • AAI clade 1-44 medoid: miga DE18A TARA PON MAG 00040
    • AAI clade 1-45 medoid: asm GCA 003223695 1
    • AAI clade 1-46 medoid: asm GCA 900069895 1
    • AAI clade 1-47 medoid: gb MEQD00000000
    • AAI clade 1-48 medoid: asm GCA 002436015 1
    • AAI clade 1-49 medoid: asm GCF 000020725 1
    • AAI clade 1-50 medoid: miga AP18A bin 10
    • AAI clade 1-51 medoid: asm GCF 000428885 1
    • AAI clade 1-52 medoid: asm GCA 003647035 1
    • AAI clade 1-53 medoid: asm GCA 003599105 1
    • AAI clade 1-54 medoid: asm GCA 003644665 1
    • AAI clade 1-55 medoid: asm GCA 004377305 1
    • AAI clade 1-56 medoid: asm GCA 002345205 1
    • AAI clade 1-57 medoid: gb ASPL00000000
    • AAI clade 1-58 medoid: asm GCA 001773925 1
    • AAI clade 1-59 medoid: asm GCA 001804005 1
    • AAI clade 1-60 medoid: asm GCA 002441245 1
    • AAI clade 1-61 medoid: asm GCA 001464455 1
    • AAI clade 1-62 medoid: asm GCA 002345525 1
    • AAI clade 1-63 medoid: miga DE18A TARA ASW MAG 00020
    • AAI clade 1-64 medoid: asm GCA 003567075 1
    • AAI clade 1-65 medoid: asm GCA 002779455 1
    • AAI clade 1-66 medoid: gb MGSZ00000000
    • AAI clade 1-67 medoid: miga PS19A RaymondF 2016 P1E0 bin 62
    • AAI clade 1-68 medoid: miga PS19A GeversD 2014 SKBSTL067 bin 21
    • AAI clade 1-69 medoid: asm GCA 001800605 1
    • AAI clade 1-70 medoid: miga PS19A ZeeviD 2015 PNP Main 706 megahit bin 52
    • AAI clade 1-71 medoid: miga SW19B 10677 0052 idba bin 148
    • AAI clade 1-72 medoid: miga PS19A HMP 2012 SRS017227 bin 40
    • AAI clade 1-73 medoid: gb PLHE00000000
    • AAI clade 1-74 medoid: miga PS19A HeQ 2017 RSZAXPI003104 142 bin 42
    • AAI clade 1-75 medoid: miga PS19A HeQ 2017 RSZAXPI003062 102 bin 10
    • AAI clade 1-76 medoid: asm GCA 002780715 1
    • AAI clade 1-77 medoid: gb PLMY00000000
    • AAI clade 1-78 medoid: asm GCA 001777915 1
    • AAI clade 1-79 medoid: asm GCA 002311805 1
    • AAI clade 1-80 medoid: miga TJ18A OLLG01
    • AAI clade 1-81 medoid: miga SW19B 10676 0004 idba bin 50
    • AAI clade 1-82 medoid: miga DE18A TARA MED MAG 00069
    • AAI clade 1-83 medoid: asm GCA 002441125 1
    • AAI clade 1-84 medoid: miga SS18B METABAT VerySpecific 233
    • AAI clade 1-85 medoid: asm GCA 001778355 1
    • AAI clade 1-86 medoid: asm GCA 003643855 1
    • AAI clade 1-87 medoid: asm GCA 003838035 1
    • AAI clade 1-88 medoid: miga DE18A TARA PON MAG 00081
    • AAI clade 1-89 medoid: asm GCA 004376485 1
    • AAI clade 1-90 medoid: asm GCA 004376765 1
    • AAI clade 1-91 medoid: asm GCA 003644465 1
    • AAI clade 1-92 medoid: asm GCA 003568005 1
    • AAI clade 1-93 medoid: gb PMOL00000000
    • AAI clade 1-94 medoid: gb PLNW00000000
    • AAI clade 1-95 medoid: gb PMTQ00000000
    • AAI clade 1-96 medoid: miga TJ18A OLLS01
    • AAI clade 1-97 medoid: miga PS19A WenC 2017 RA056 bin 65
  • AAI clade 2 medoid: asm GCA 003225555 1
  • AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
  • AAI clade 4 medoid: miga BA16A LX33 339
  • AAI clade 5 medoid: asm GCA 002344625 1
  • AAI clade 6 medoid: miga ZQ19A BG 240
  • AAI clade 7 medoid: asm GCA 003220495 1
  • AAI clade 8 medoid: asm GCA 001768045 1
  • AAI clade 9 medoid: miga ZQ19A BG 239
  • AAI clade 10 medoid: asm GCA 002508675 1
  • AAI clade 11 medoid: miga PU18A 2609459660
  • AAI clade 12 medoid: asm GCA 003662385 1
  • AAI clade 13 medoid: asm GCA 002869845 2
  • AAI clade 14 medoid: miga ZQ19A BG 334
  • AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
  • AAI clade 16 medoid: asm GCA 003218215 1
  • AAI clade 17 medoid: gb PMWP00000000
  • AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
  • AAI clade 19 medoid: miga ZQ19A BG 192
  • AAI clade 20 medoid: asm GCA 003222055 1
  • AAI clade 21 medoid: asm GCA 002304435 1
  • AAI clade 22 medoid: gb PMOA00000000
  • AAI clade 23 medoid: asm GCA 001180165 1
  • AAI clade 24 medoid: asm GCA 900155275 1
  • AAI clade 25 medoid: asm GCA 003562785 1
  • AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
  • AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
  • AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
  • AAI clade 29 medoid: asm GCA 900317055 1
  • AAI clade 30 medoid: gb MERW00000000
  • AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
  • AAI clade 32 medoid: asm GCA 002320005 1
  • AAI clade 33 medoid: asm GCA 900318825 1
  • AAI clade 34 medoid: miga BA16A 35 5E
  • AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
  • AAI clade 36 medoid: asm GCA 001604115 1
  • AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
  • AAI clade 38 medoid: miga BA16A 35 12A
  • AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
  • AAI clade 40 medoid: asm GCA 002372655 1
  • AAI clade 41 medoid: miga ZQ19A BG 670
  • AAI clade 42 medoid: asm GCA 002732585 1
  • AAI clade 43 medoid: gb MFTG00000000
  • AAI clade 44 medoid: asm GCF 000217915 1
  • AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
  • AAI clade 46 medoid: asm GCA 005503595 1
  • AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
  • AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
  • AAI clade 49 medoid: asm GCA 002787475 1
  • AAI clade 50 medoid: asm GCA 002411275 1
  • AAI clade 51 medoid: asm GCA 001003965 1
  • AAI clade 52 medoid: asm GCA 900315795 1
  • AAI clade 53 medoid: asm GCA 002782265 1
  • AAI clade 54 medoid: asm GCA 002506275 1
  • AAI clade 55 medoid: asm GCA 002501805 1
  • AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
  • AAI clade 57 medoid: asm GCA 002362915 1
  • AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
  • AAI clade 59 medoid: asm GCA 002478295 1
  • AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
  • AAI clade 61 medoid: asm GCA 002373045 1
  • AAI clade 62 medoid: gb PLQF00000000
  • AAI clade 63 medoid: asm GCA 002352835 1
  • AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
  • AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
  • AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
  • AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
  • AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
  • AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
  • AAI clade 70 medoid: asm GCA 002369075 1
  • AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
  • AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
  • AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
  • AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
  • AAI clade 75 medoid: asm GCA 002294525 1
  • AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
  • AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
  • AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
  • AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
  • AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
  • AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
  • AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
  • AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
  • AAI clade 84 medoid: asm GCA 003020965 1
  • AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
  • AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
  • AAI clade 87 medoid: asm GCA 001701225 1
  • AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
  • AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
  • AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
  • AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
  • AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
  • AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1