AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: asm GCA 900155255 1
    • AAI clade 1-1 medoid: asm GCA 003222455 1
    • AAI clade 1-2 medoid: asm GCA 900155255 1
      • AAI clade 1-2-1 medoid: asm GCA 900155255 1
        • AAI clade 1-2-1-1 medoid: asm GCA 003819755 1
        • AAI clade 1-2-1-2 medoid: asm GCA 900155255 1
          • AAI clade 1-2-1-2-1 medoid: asm GCA 003820615 1
          • AAI clade 1-2-1-2-2 medoid: asm GCA 002897695 1
          • AAI clade 1-2-1-2-3 medoid: asm GCA 004195035 1
          • AAI clade 1-2-1-2-4 medoid: asm GCA 002238705 1
          • AAI clade 1-2-1-2-5 medoid: asm GCA 002238945 1
          • AAI clade 1-2-1-2-6 medoid: asm GCA 003670675 1
          • AAI clade 1-2-1-2-7 medoid: asm GCA 900155255 1
          • AAI clade 1-2-1-2-8 medoid: asm GCF 000024805 1
          • AAI clade 1-2-1-2-9 medoid: asm GCA 002328195 1
          • AAI clade 1-2-1-2-10 medoid: asm GCA 002347755 1
          • AAI clade 1-2-1-2-11 medoid: asm GCA 002342225 1
          • AAI clade 1-2-1-2-12 medoid: asm GCA 002402325 1
          • AAI clade 1-2-1-2-13 medoid: asm GCA 002344365 1
          • AAI clade 1-2-1-2-14 medoid: asm GCA 002390675 1
          • AAI clade 1-2-1-2-15 medoid: asm GCA 002450755 1
          • AAI clade 1-2-1-2-16 medoid: asm GCA 002441185 1
          • AAI clade 1-2-1-2-17 medoid: asm GCA 002344285 1
          • AAI clade 1-2-1-2-18 medoid: asm GCA 002380655 1
          • AAI clade 1-2-1-2-19 medoid: asm GCA 002453135 1
          • AAI clade 1-2-1-2-20 medoid: asm GCA 002347965 1
          • AAI clade 1-2-1-2-21 medoid: asm GCA 002316705 1
          • AAI clade 1-2-1-2-22 medoid: asm GCA 002428525 1
          • AAI clade 1-2-1-2-23 medoid: asm GCA 002329605 1
          • AAI clade 1-2-1-2-24 medoid: asm GCA 002382585 1
          • AAI clade 1-2-1-2-25 medoid: asm GCA 002329445 1
          • AAI clade 1-2-1-2-26 medoid: asm GCA 001767575 1
          • AAI clade 1-2-1-2-27 medoid: asm GCA 001780165 1
          • AAI clade 1-2-1-2-28 medoid: asm GCA 001780385 1
          • AAI clade 1-2-1-2-29 medoid: asm GCA 001781945 1
          • AAI clade 1-2-1-2-30 medoid: asm GCA 001791795 1
          • AAI clade 1-2-1-2-31 medoid: asm GCA 001797815 1
          • AAI clade 1-2-1-2-32 medoid: asm GCA 001798805 1
          • AAI clade 1-2-1-2-33 medoid: asm GCA 001798185 1
          • AAI clade 1-2-1-2-34 medoid: asm GCA 001798265 1
          • AAI clade 1-2-1-2-35 medoid: asm GCA 001798535 1
          • AAI clade 1-2-1-2-36 medoid: asm GCA 001799195 1
          • AAI clade 1-2-1-2-37 medoid: asm GCA 001798655 1
          • AAI clade 1-2-1-2-38 medoid: asm GCA 001800085 1
          • AAI clade 1-2-1-2-39 medoid: asm GCA 003599815 1
          • AAI clade 1-2-1-2-40 medoid: asm GCA 003598065 1
          • AAI clade 1-2-1-2-41 medoid: asm GCA 004144535 1
          • AAI clade 1-2-1-2-42 medoid: asm GCA 004376575 1
          • AAI clade 1-2-1-2-43 medoid: asm GCA 004376605 1
          • AAI clade 1-2-1-2-44 medoid: asm GCA 004376625 1
          • AAI clade 1-2-1-2-45 medoid: asm GCA 003566035 1
          • AAI clade 1-2-1-2-46 medoid: asm GCA 003565935 1
          • AAI clade 1-2-1-2-47 medoid: asm GCA 003561145 1
          • AAI clade 1-2-1-2-48 medoid: asm GCA 003558615 1
          • AAI clade 1-2-1-2-49 medoid: asm GCA 003551455 1
          • AAI clade 1-2-1-2-50 medoid: asm GCA 003551885 1
          • AAI clade 1-2-1-2-51 medoid: asm GCA 003557465 1
          • AAI clade 1-2-1-2-52 medoid: asm GCA 003561725 1
          • AAI clade 1-2-1-2-53 medoid: asm GCA 003565615 1
          • AAI clade 1-2-1-2-54 medoid: asm GCA 003644055 1
          • AAI clade 1-2-1-2-55 medoid: asm GCA 003644625 1
          • AAI clade 1-2-1-2-56 medoid: asm GCA 003644885 1
          • AAI clade 1-2-1-2-57 medoid: asm GCA 003647075 1
          • AAI clade 1-2-1-2-58 medoid: asm GCA 003647095 1
          • AAI clade 1-2-1-2-59 medoid: asm GCA 003647175 1
          • AAI clade 1-2-1-2-60 medoid: asm GCA 003647755 1
          • AAI clade 1-2-1-2-61 medoid: asm GCA 003650255 1
          • AAI clade 1-2-1-2-62 medoid: asm GCA 004213565 1
          • AAI clade 1-2-1-2-63 medoid: asm GCA 001465015 1
          • AAI clade 1-2-1-2-64 medoid: asm GCA 001464385 1
          • AAI clade 1-2-1-2-65 medoid: gb PMZC00000000
          • AAI clade 1-2-1-2-66 medoid: gb PMLL00000000
          • AAI clade 1-2-1-2-67 medoid: gb MGDF00000000
          • AAI clade 1-2-1-2-68 medoid: gb MIBB00000000
          • AAI clade 1-2-1-2-69 medoid: gb LMZT00000000
          • AAI clade 1-2-1-2-70 medoid: miga WB18A mgm4762905 3 050 upload
          • AAI clade 1-2-1-2-71 medoid: miga WB18A mgm4762907 3 050 upload
          • AAI clade 1-2-1-2-72 medoid: miga DE18A TARA ANW MAG 00065
          • AAI clade 1-2-1-2-73 medoid: miga DE18A TARA IOS MAG 00066
          • AAI clade 1-2-1-2-74 medoid: miga DE18A TARA PON MAG 00063
          • AAI clade 1-2-1-2-75 medoid: miga DE18A TARA PSW MAG 00024
          • AAI clade 1-2-1-2-76 medoid: miga DE18A TARA PSW MAG 00071
          • AAI clade 1-2-1-2-77 medoid: miga DE18A TARA PSW MAG 00120
          • AAI clade 1-2-1-2-78 medoid: miga SW19B 10674 min2k bin 3288
          • AAI clade 1-2-1-2-79 medoid: miga SW19B 10677 min2k bin 2260
          • AAI clade 1-2-1-2-80 medoid: miga ZQ19A BG 534
          • AAI clade 1-2-1-2-81 medoid: miga PS19A VincentC 2016 MM002 1 megahit bin 14
          • AAI clade 1-2-1-2-82 medoid: miga PS19A VincentC 2016 MM029 3 megahit bin 21
          • AAI clade 1-2-1-2-83 medoid: asm GCA 002937495 1
          • AAI clade 1-2-1-2-84 medoid: asm GCA 003175925 1
          • AAI clade 1-2-1-2-85 medoid: asm GCA 002793495 1
          • AAI clade 1-2-1-2-86 medoid: asm GCA 002796325 1
          • AAI clade 1-2-1-2-87 medoid: asm GCA 002788255 1
          • AAI clade 1-2-1-2-88 medoid: asm GCA 002774505 1
          • AAI clade 1-2-1-2-89 medoid: asm GCA 002770915 1
          • AAI clade 1-2-1-2-90 medoid: miga WD15A P1163 103 58
          • AAI clade 1-2-1-2-91 medoid: miga CB19A Bin 101
          • AAI clade 1-2-1-2-92 medoid: miga CB19A Bin 76 1 3
          • AAI clade 1-2-1-2-93 medoid: miga CB19A Bin 8
        • AAI clade 1-2-1-3 medoid: asm GCA 002500605 1
        • AAI clade 1-2-1-4 medoid: asm GCA 001872655 1
        • AAI clade 1-2-1-5 medoid: asm GCA 003327425 1
        • AAI clade 1-2-1-6 medoid: miga DE18A TARA PSW MAG 00093
        • AAI clade 1-2-1-7 medoid: asm GCA 003557825 1
        • AAI clade 1-2-1-8 medoid: asm GCA 002869005 1
        • AAI clade 1-2-1-9 medoid: asm GCA 002238905 1
        • AAI clade 1-2-1-10 medoid: asm GCA 002455955 1
        • AAI clade 1-2-1-11 medoid: asm GCA 001790955 1
        • AAI clade 1-2-1-12 medoid: asm GCA 001794945 1
        • AAI clade 1-2-1-13 medoid: miga CB19A Bin 36
        • AAI clade 1-2-1-14 medoid: miga TJ18A OLLW01
        • AAI clade 1-2-1-15 medoid: gb PNAM00000000
        • AAI clade 1-2-1-16 medoid: asm GCA 003567195 1
        • AAI clade 1-2-1-17 medoid: miga WB18A mgm4762943 3 050 upload
        • AAI clade 1-2-1-18 medoid: asm GCA 003645695 1
        • AAI clade 1-2-1-19 medoid: asm GCA 003290465 1
        • AAI clade 1-2-1-20 medoid: asm GCA 001303225 1
        • AAI clade 1-2-1-21 medoid: asm GCA 004376115 1
        • AAI clade 1-2-1-22 medoid: asm GCA 003566775 1
        • AAI clade 1-2-1-23 medoid: asm GCA 002787535 1
        • AAI clade 1-2-1-24 medoid: asm GCA 003571105 1
        • AAI clade 1-2-1-25 medoid: asm GCA 002327965 1
        • AAI clade 1-2-1-26 medoid: asm GCA 001508655 1
        • AAI clade 1-2-1-27 medoid: asm GCA 002455425 1
        • AAI clade 1-2-1-28 medoid: asm GCA 002348535 1
        • AAI clade 1-2-1-29 medoid: miga DE18A TARA RED MAG 00032
        • AAI clade 1-2-1-30 medoid: miga DE18A TARA IOS MAG 00062
        • AAI clade 1-2-1-31 medoid: miga DE18A TARA PSE MAG 00102
        • AAI clade 1-2-1-32 medoid: asm GCA 002395385 1
        • AAI clade 1-2-1-33 medoid: asm GCA 002352545 1
        • AAI clade 1-2-1-34 medoid: miga DE18A TARA PON MAG 00048
        • AAI clade 1-2-1-35 medoid: asm GCA 002394665 1
        • AAI clade 1-2-1-36 medoid: asm GCA 001829455 1
        • AAI clade 1-2-1-37 medoid: asm GCA 003643935 1
        • AAI clade 1-2-1-38 medoid: asm GCA 003565915 1
        • AAI clade 1-2-1-39 medoid: asm GCA 001772705 1
        • AAI clade 1-2-1-40 medoid: asm GCA 001768015 1
        • AAI clade 1-2-1-41 medoid: asm GCA 001774375 1
        • AAI clade 1-2-1-42 medoid: asm GCA 001002835 1
        • AAI clade 1-2-1-43 medoid: miga WB18A mgm4762941 3 050 upload
        • AAI clade 1-2-1-44 medoid: asm GCA 001784175 1
        • AAI clade 1-2-1-45 medoid: asm GCA 001800515 1
        • AAI clade 1-2-1-46 medoid: asm GCA 001787865 1
        • AAI clade 1-2-1-47 medoid: asm GCA 001797365 1
        • AAI clade 1-2-1-48 medoid: miga DE18A TARA PSW MAG 00030
        • AAI clade 1-2-1-49 medoid: asm GCA 001798105 1
        • AAI clade 1-2-1-50 medoid: asm GCA 001799115 1
        • AAI clade 1-2-1-51 medoid: gb MHGZ00000000
        • AAI clade 1-2-1-52 medoid: asm GCA 001824565 1
        • AAI clade 1-2-1-53 medoid: asm GCA 001828495 1
        • AAI clade 1-2-1-54 medoid: asm GCA 001771115 1
        • AAI clade 1-2-1-55 medoid: asm GCA 001771185 1
        • AAI clade 1-2-1-56 medoid: gb METQ00000000
        • AAI clade 1-2-1-57 medoid: asm GCA 001771535 1
        • AAI clade 1-2-1-58 medoid: asm GCA 900079105 1
        • AAI clade 1-2-1-59 medoid: asm GCA 003598085 1
        • AAI clade 1-2-1-60 medoid: asm GCA 900000325 1
        • AAI clade 1-2-1-61 medoid: asm GCA 003022325 1
        • AAI clade 1-2-1-62 medoid: asm GCA 003223145 1
        • AAI clade 1-2-1-63 medoid: asm GCA 000990225 1
        • AAI clade 1-2-1-64 medoid: asm GCA 000993135 1
        • AAI clade 1-2-1-65 medoid: asm GCA 000993565 1
        • AAI clade 1-2-1-66 medoid: asm GCA 000999445 1
        • AAI clade 1-2-1-67 medoid: asm GCA 001002925 1
        • AAI clade 1-2-1-68 medoid: asm GCA 004375785 1
        • AAI clade 1-2-1-69 medoid: asm GCA 000634655 1
        • AAI clade 1-2-1-70 medoid: asm GCA 003562455 1
        • AAI clade 1-2-1-71 medoid: miga WB18A mgm4762931 3 050 upload
        • AAI clade 1-2-1-72 medoid: asm GCA 003554345 1
        • AAI clade 1-2-1-73 medoid: asm GCA 003557485 1
        • AAI clade 1-2-1-74 medoid: asm GCA 003551625 1
        • AAI clade 1-2-1-75 medoid: asm GCA 003563575 1
        • AAI clade 1-2-1-76 medoid: asm GCA 003557545 1
        • AAI clade 1-2-1-77 medoid: asm GCA 002781425 1
        • AAI clade 1-2-1-78 medoid: asm GCA 002789615 1
        • AAI clade 1-2-1-79 medoid: asm GCA 004214055 1
        • AAI clade 1-2-1-80 medoid: asm GCA 005239795 1
        • AAI clade 1-2-1-81 medoid: gb ASMX00000000
        • AAI clade 1-2-1-82 medoid: gb AQSL00000000
        • AAI clade 1-2-1-83 medoid: gb ASNF00000000
        • AAI clade 1-2-1-84 medoid: miga CB19A Bin 49
        • AAI clade 1-2-1-85 medoid: gb PLEW00000000
        • AAI clade 1-2-1-86 medoid: miga WB18A mgm4762960 3 050 upload
        • AAI clade 1-2-1-87 medoid: gb MFXF00000000
        • AAI clade 1-2-1-88 medoid: miga DE18A TARA ANW MAG 00072
        • AAI clade 1-2-1-89 medoid: miga WD15A P1181 101 67
        • AAI clade 1-2-1-90 medoid: miga DE18A TARA ANE MAG 00054
        • AAI clade 1-2-1-91 medoid: miga DE18A TARA RED MAG 00043
        • AAI clade 1-2-1-92 medoid: miga PS19A HMP 2012 SRS011111 bin 13
        • AAI clade 1-2-1-93 medoid: miga PS19A HMP 2012 SRS017215 bin 4
        • AAI clade 1-2-1-94 medoid: asm GCA 002778735 1
        • AAI clade 1-2-1-95 medoid: miga WD15A P1181 101 0
        • AAI clade 1-2-1-96 medoid: asm GCA 002780705 1
        • AAI clade 1-2-1-97 medoid: asm GCA 002778805 1
        • AAI clade 1-2-1-98 medoid: miga WD15A P1181 101 86
        • AAI clade 1-2-1-99 medoid: miga WD15A P1181 103 39
        • AAI clade 1-2-1-100 medoid: miga CB19A Bin 76 1 4
      • AAI clade 1-2-2 medoid: asm GCA 002049845 1
      • AAI clade 1-2-3 medoid: gb PMBB00000000
    • AAI clade 1-3 medoid: asm GCA 002771665 1
    • AAI clade 1-4 medoid: asm GCA 002868985 1
    • AAI clade 1-5 medoid: asm GCA 003646895 1
    • AAI clade 1-6 medoid: miga WD15A P1181 101 37
    • AAI clade 1-7 medoid: asm GCF 000007985 2
    • AAI clade 1-8 medoid: asm GCF 000013385 1
    • AAI clade 1-9 medoid: asm GCA 001830135 1
    • AAI clade 1-10 medoid: asm GCF 000025725 1
    • AAI clade 1-11 medoid: miga PS19A CM periimplantitis SP 264SPI T016 bin 10
    • AAI clade 1-12 medoid: gb PLSV00000000
    • AAI clade 1-13 medoid: asm GCA 002412715 1
    • AAI clade 1-14 medoid: gb PMZH00000000
    • AAI clade 1-15 medoid: asm GCA 001542995 1
    • AAI clade 1-16 medoid: asm GCA 900491205 1
    • AAI clade 1-17 medoid: asm GCA 002898135 1
    • AAI clade 1-18 medoid: asm GCA 001805005 1
    • AAI clade 1-19 medoid: asm GCA 001805565 1
    • AAI clade 1-20 medoid: asm GCA 002347095 1
    • AAI clade 1-21 medoid: asm GCA 001795535 1
    • AAI clade 1-22 medoid: asm GCA 001803975 1
    • AAI clade 1-23 medoid: asm GCA 002772785 1
    • AAI clade 1-24 medoid: miga SS18A Bin 39 2 contigs
    • AAI clade 1-25 medoid: asm GCA 001797445 1
    • AAI clade 1-26 medoid: miga WD15A P1181 103 1
    • AAI clade 1-27 medoid: miga SS18B METABAT VerySpecific 243
    • AAI clade 1-28 medoid: miga SS18A Bin 29 2 contigs
    • AAI clade 1-29 medoid: asm GCA 002500485 1
    • AAI clade 1-30 medoid: asm GCA 002817235 1
    • AAI clade 1-31 medoid: asm GCA 004213005 1
    • AAI clade 1-32 medoid: gb PKYI00000000
    • AAI clade 1-33 medoid: asm GCA 003104975 1
    • AAI clade 1-34 medoid: asm GCA 003978875 1
    • AAI clade 1-35 medoid: miga DE18A TARA RED MAG 00030
    • AAI clade 1-36 medoid: asm GCA 003641645 1
    • AAI clade 1-37 medoid: asm GCA 002367355 1
    • AAI clade 1-38 medoid: asm GCA 002424645 1
    • AAI clade 1-39 medoid: asm GCA 002753215 1
    • AAI clade 1-40 medoid: asm GCA 002753455 1
    • AAI clade 1-41 medoid: asm GCA 003599365 1
    • AAI clade 1-42 medoid: asm GCA 003635255 1
    • AAI clade 1-43 medoid: asm GCA 001799045 1
    • AAI clade 1-44 medoid: miga DE18A TARA PON MAG 00040
    • AAI clade 1-45 medoid: asm GCA 003223695 1
    • AAI clade 1-46 medoid: asm GCA 900069895 1
    • AAI clade 1-47 medoid: gb MEQD00000000
    • AAI clade 1-48 medoid: asm GCA 002436015 1
    • AAI clade 1-49 medoid: asm GCF 000020725 1
    • AAI clade 1-50 medoid: miga AP18A bin 10
    • AAI clade 1-51 medoid: asm GCF 000428885 1
    • AAI clade 1-52 medoid: asm GCA 003647035 1
    • AAI clade 1-53 medoid: asm GCA 003599105 1
    • AAI clade 1-54 medoid: asm GCA 003644665 1
    • AAI clade 1-55 medoid: asm GCA 004377305 1
    • AAI clade 1-56 medoid: asm GCA 002345205 1
    • AAI clade 1-57 medoid: gb ASPL00000000
    • AAI clade 1-58 medoid: asm GCA 001773925 1
    • AAI clade 1-59 medoid: asm GCA 001804005 1
    • AAI clade 1-60 medoid: asm GCA 002441245 1
    • AAI clade 1-61 medoid: asm GCA 001464455 1
    • AAI clade 1-62 medoid: asm GCA 002345525 1
    • AAI clade 1-63 medoid: miga DE18A TARA ASW MAG 00020
    • AAI clade 1-64 medoid: asm GCA 003567075 1
    • AAI clade 1-65 medoid: asm GCA 002779455 1
    • AAI clade 1-66 medoid: gb MGSZ00000000
    • AAI clade 1-67 medoid: miga PS19A RaymondF 2016 P1E0 bin 62
    • AAI clade 1-68 medoid: miga PS19A GeversD 2014 SKBSTL067 bin 21
    • AAI clade 1-69 medoid: asm GCA 001800605 1
    • AAI clade 1-70 medoid: miga PS19A ZeeviD 2015 PNP Main 706 megahit bin 52
    • AAI clade 1-71 medoid: miga SW19B 10677 0052 idba bin 148
    • AAI clade 1-72 medoid: miga PS19A HMP 2012 SRS017227 bin 40
    • AAI clade 1-73 medoid: gb PLHE00000000
    • AAI clade 1-74 medoid: miga PS19A HeQ 2017 RSZAXPI003104 142 bin 42
    • AAI clade 1-75 medoid: miga PS19A HeQ 2017 RSZAXPI003062 102 bin 10
    • AAI clade 1-76 medoid: asm GCA 002780715 1
    • AAI clade 1-77 medoid: gb PLMY00000000
    • AAI clade 1-78 medoid: asm GCA 001777915 1
    • AAI clade 1-79 medoid: asm GCA 002311805 1
    • AAI clade 1-80 medoid: miga TJ18A OLLG01
    • AAI clade 1-81 medoid: miga SW19B 10676 0004 idba bin 50
    • AAI clade 1-82 medoid: miga DE18A TARA MED MAG 00069
    • AAI clade 1-83 medoid: asm GCA 002441125 1
    • AAI clade 1-84 medoid: miga SS18B METABAT VerySpecific 233
    • AAI clade 1-85 medoid: asm GCA 001778355 1
    • AAI clade 1-86 medoid: asm GCA 003643855 1
    • AAI clade 1-87 medoid: asm GCA 003838035 1
    • AAI clade 1-88 medoid: miga DE18A TARA PON MAG 00081
    • AAI clade 1-89 medoid: asm GCA 004376485 1
    • AAI clade 1-90 medoid: asm GCA 004376765 1
    • AAI clade 1-91 medoid: asm GCA 003644465 1
    • AAI clade 1-92 medoid: asm GCA 003568005 1
    • AAI clade 1-93 medoid: gb PMOL00000000
    • AAI clade 1-94 medoid: gb PLNW00000000
    • AAI clade 1-95 medoid: gb PMTQ00000000
    • AAI clade 1-96 medoid: miga TJ18A OLLS01
    • AAI clade 1-97 medoid: miga PS19A WenC 2017 RA056 bin 65
  • AAI clade 2 medoid: asm GCA 003225555 1
  • AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
  • AAI clade 4 medoid: miga BA16A LX33 339
  • AAI clade 5 medoid: asm GCA 002344625 1
  • AAI clade 6 medoid: miga ZQ19A BG 240
  • AAI clade 7 medoid: asm GCA 003220495 1
  • AAI clade 8 medoid: asm GCA 001768045 1
  • AAI clade 9 medoid: miga ZQ19A BG 239
  • AAI clade 10 medoid: asm GCA 002508675 1
  • AAI clade 11 medoid: miga PU18A 2609459660
  • AAI clade 12 medoid: asm GCA 003662385 1
  • AAI clade 13 medoid: asm GCA 002869845 2
  • AAI clade 14 medoid: miga ZQ19A BG 334
  • AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
  • AAI clade 16 medoid: asm GCA 003218215 1
  • AAI clade 17 medoid: gb PMWP00000000
  • AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
  • AAI clade 19 medoid: miga ZQ19A BG 192
  • AAI clade 20 medoid: asm GCA 003222055 1
  • AAI clade 21 medoid: asm GCA 002304435 1
  • AAI clade 22 medoid: gb PMOA00000000
  • AAI clade 23 medoid: asm GCA 001180165 1
  • AAI clade 24 medoid: asm GCA 900155275 1
  • AAI clade 25 medoid: asm GCA 003562785 1
  • AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
  • AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
  • AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
  • AAI clade 29 medoid: asm GCA 900317055 1
  • AAI clade 30 medoid: gb MERW00000000
  • AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
  • AAI clade 32 medoid: asm GCA 002320005 1
  • AAI clade 33 medoid: asm GCA 900318825 1
  • AAI clade 34 medoid: miga BA16A 35 5E
  • AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
  • AAI clade 36 medoid: asm GCA 001604115 1
  • AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
  • AAI clade 38 medoid: miga BA16A 35 12A
  • AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
  • AAI clade 40 medoid: asm GCA 002372655 1
  • AAI clade 41 medoid: miga ZQ19A BG 670
  • AAI clade 42 medoid: asm GCA 002732585 1
  • AAI clade 43 medoid: gb MFTG00000000
  • AAI clade 44 medoid: asm GCF 000217915 1
  • AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
  • AAI clade 46 medoid: asm GCA 005503595 1
  • AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
  • AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
  • AAI clade 49 medoid: asm GCA 002787475 1
  • AAI clade 50 medoid: asm GCA 002411275 1
  • AAI clade 51 medoid: asm GCA 001003965 1
  • AAI clade 52 medoid: asm GCA 900315795 1
  • AAI clade 53 medoid: asm GCA 002782265 1
  • AAI clade 54 medoid: asm GCA 002506275 1
  • AAI clade 55 medoid: asm GCA 002501805 1
  • AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
  • AAI clade 57 medoid: asm GCA 002362915 1
  • AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
  • AAI clade 59 medoid: asm GCA 002478295 1
  • AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
  • AAI clade 61 medoid: asm GCA 002373045 1
  • AAI clade 62 medoid: gb PLQF00000000
  • AAI clade 63 medoid: asm GCA 002352835 1
  • AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
  • AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
  • AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
  • AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
  • AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
  • AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
  • AAI clade 70 medoid: asm GCA 002369075 1
  • AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
  • AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
  • AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
  • AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
  • AAI clade 75 medoid: asm GCA 002294525 1
  • AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
  • AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
  • AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
  • AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
  • AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
  • AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
  • AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
  • AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
  • AAI clade 84 medoid: asm GCA 003020965 1
  • AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
  • AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
  • AAI clade 87 medoid: asm GCA 001701225 1
  • AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
  • AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
  • AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
  • AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
  • AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
  • AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1