AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 4-1
medoid: Acinetobacter courvalinii GCF 008802255 1
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AAI clade 4-2
medoid: Pseudomonas congelans GCF 900103225 1
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AAI clade 4-3
medoid: Pseudomonas monsensis GCF 014268495 2
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AAI clade 4-4
medoid: Pseudomonas nitroreducens GCF 012986245 1
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AAI clade 4-5
medoid: Pseudomonas azotoformans GCF 900624915 1
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AAI clade 4-6
medoid: Pseudomonas chengduensis GCF 900102635 1
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AAI clade 4-7
medoid: Acinetobacter bouvetii DSM 14964 CIP 107468 GCF 000373725 1
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AAI clade 4-8
medoid: Moraxella equi GCF 002027555 1
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AAI clade 4-9
medoid: Halomonas ventosae GCF 004363555 1
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AAI clade 4-10
medoid: Pseudomonas songnenensis GCF 003696315 1
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AAI clade 4-11
medoid: Pseudomonas plecoglossicida GCF 030160515 1
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AAI clade 4-12
medoid: Psychrobacter aquimaris GCF 016107525 1
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AAI clade 4-13
medoid: Alloalcanivorax xenomutans GCF 900217905 1
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AAI clade 4-14
medoid: Marinobacterium sediminicola GCF 900184155 1
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AAI clade 4-15
medoid: Salinicola lusitanus GCF 003206045 1
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AAI clade 4-16
medoid: Seongchinamella unica GCF 004354085 1
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AAI clade 4-17
medoid: Halomonas alkaliphila GCF 033842765 1
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AAI clade 4-18
medoid: Marinobacter flavimaris GCF 003363485 1
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AAI clade 4-19
medoid: Microbulbifer marinus GCF 900107725 1
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AAI clade 4-20
medoid: Acidithiobacillus ferrooxidans ATCC 23270 GCF 000021485 1
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AAI clade 4-21
medoid: Ectothiorhodospira shaposhnikovii GCF 022227765 1
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AAI clade 4-22
medoid: Thalassolituus alkanivorans GCF 020447205 1
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AAI clade 4-23
medoid: Electrothrix rattekaaiensis asm GCA 032595675 1
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AAI clade 4-24
medoid: Halopseudomonas gallaeciensis GCF 003444685 1
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AAI clade 4-25
medoid: Maridesulfovibrio salexigens DSM 2638 GCF 000023445 1
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AAI clade 4-26
medoid: Endozoicomonas gorgoniicola GCF 025562715 2
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AAI clade 4-27
medoid: Allochromatium humboldtianum GCF 013385175 1
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AAI clade 4-27-1
medoid: Marichromatium gracile GCF 004343155 1
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AAI clade 4-27-2
medoid: Thiorhodovibrio frisius GCF 000228725 2
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AAI clade 4-27-3
medoid: Acidiferrobacter thiooxydans GCF 003333315 1
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AAI clade 4-27-4
medoid: Allochromatium humboldtianum GCF 013385175 1
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AAI clade 4-27-5
medoid: Beggiatoa alba B18LD GCF 000245015 1
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AAI clade 4-27-6
medoid: Caldichromatium japonicum GCF 011290485 1
1 dataset: Caldichromatium japonicum GCF 011290485 1 (AAI: 100.0%)
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AAI clade 4-27-7
medoid: Candidatus Thiodictyon syntrophicum GCF 002813775 1
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AAI clade 4-27-8
medoid: Chromatium okenii GCF 016583745 1
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AAI clade 4-27-9
medoid: Halochromatium roseum GCF 016653315 1
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AAI clade 4-27-10
medoid: Imhoffiella purpurea GCF 000585215 1
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AAI clade 4-27-11
medoid: Immundisolibacter cernigliae GCF 001697225 1
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AAI clade 4-27-12
medoid: Lamprocystis purpurea DSM 4197 GCF 000379525 1
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AAI clade 4-27-13
medoid: Methylophaga nitratireducenticrescens GCF 000260985 4
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AAI clade 4-27-14
medoid: Plasticicumulans acidivorans GCF 003182095 1
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AAI clade 4-27-15
medoid: Sedimenticola selenatireducens DSM 17993 GCF 000428045 1
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AAI clade 4-27-16
medoid: Thiocapsa roseopersicina GCF 900106925 1
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AAI clade 4-27-17
medoid: Thiocapsa imhoffii GCF 016583985 1
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AAI clade 4-27-18
medoid: Thiocystis minor GCF 016653465 1
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AAI clade 4-27-19
medoid: Thioflavicoccus mobilis 8321 GCF 000327045 1
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AAI clade 4-27-20
medoid: Thiohalocapsa halophila GCF 016583825 1
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AAI clade 4-27-21
medoid: Thiohalocapsa marina GCF 008632335 1
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AAI clade 4-27-22
medoid: Thiolapillus brandeum GCF 000828615 1
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AAI clade 4-27-23
medoid: Thiorhodococcus minor GCF 010820565 1
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AAI clade 4-27-1
medoid: Marichromatium gracile GCF 004343155 1
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AAI clade 4-28
medoid: Marinomonas lutimaris GCF 019426345 1
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AAI clade 4-29
medoid: Thiothrix lacustris DSM 21227 GCF 000621325 1
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AAI clade 4-1
medoid: Acinetobacter courvalinii GCF 008802255 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1