AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
    • AAI clade 4-1 medoid: Acinetobacter courvalinii GCF 008802255 1
    • AAI clade 4-2 medoid: Pseudomonas congelans GCF 900103225 1
    • AAI clade 4-3 medoid: Pseudomonas monsensis GCF 014268495 2
    • AAI clade 4-4 medoid: Pseudomonas nitroreducens GCF 012986245 1
    • AAI clade 4-5 medoid: Pseudomonas azotoformans GCF 900624915 1
    • AAI clade 4-6 medoid: Pseudomonas chengduensis GCF 900102635 1
    • AAI clade 4-7 medoid: Acinetobacter bouvetii DSM 14964 CIP 107468 GCF 000373725 1
    • AAI clade 4-8 medoid: Moraxella equi GCF 002027555 1
    • AAI clade 4-9 medoid: Halomonas ventosae GCF 004363555 1
    • AAI clade 4-10 medoid: Pseudomonas songnenensis GCF 003696315 1
    • AAI clade 4-11 medoid: Pseudomonas plecoglossicida GCF 030160515 1
    • AAI clade 4-12 medoid: Psychrobacter aquimaris GCF 016107525 1
    • AAI clade 4-13 medoid: Alloalcanivorax xenomutans GCF 900217905 1
    • AAI clade 4-14 medoid: Marinobacterium sediminicola GCF 900184155 1
    • AAI clade 4-15 medoid: Salinicola lusitanus GCF 003206045 1
    • AAI clade 4-16 medoid: Seongchinamella unica GCF 004354085 1
    • AAI clade 4-17 medoid: Halomonas alkaliphila GCF 033842765 1
    • AAI clade 4-18 medoid: Marinobacter flavimaris GCF 003363485 1
    • AAI clade 4-19 medoid: Microbulbifer marinus GCF 900107725 1
    • AAI clade 4-20 medoid: Acidithiobacillus ferrooxidans ATCC 23270 GCF 000021485 1
    • AAI clade 4-21 medoid: Ectothiorhodospira shaposhnikovii GCF 022227765 1
    • AAI clade 4-22 medoid: Thalassolituus alkanivorans GCF 020447205 1
    • AAI clade 4-23 medoid: Electrothrix rattekaaiensis asm GCA 032595675 1
    • AAI clade 4-24 medoid: Halopseudomonas gallaeciensis GCF 003444685 1
    • AAI clade 4-25 medoid: Maridesulfovibrio salexigens DSM 2638 GCF 000023445 1
    • AAI clade 4-26 medoid: Endozoicomonas gorgoniicola GCF 025562715 2
    • AAI clade 4-27 medoid: Allochromatium humboldtianum GCF 013385175 1
      • AAI clade 4-27-1 medoid: Marichromatium gracile GCF 004343155 1
      • AAI clade 4-27-2 medoid: Thiorhodovibrio frisius GCF 000228725 2
      • AAI clade 4-27-3 medoid: Acidiferrobacter thiooxydans GCF 003333315 1
      • AAI clade 4-27-4 medoid: Allochromatium humboldtianum GCF 013385175 1
      • AAI clade 4-27-5 medoid: Beggiatoa alba B18LD GCF 000245015 1
      • AAI clade 4-27-6 medoid: Caldichromatium japonicum GCF 011290485 1
      • AAI clade 4-27-7 medoid: Candidatus Thiodictyon syntrophicum GCF 002813775 1
      • AAI clade 4-27-8 medoid: Chromatium okenii GCF 016583745 1
      • AAI clade 4-27-9 medoid: Halochromatium roseum GCF 016653315 1
      • AAI clade 4-27-10 medoid: Imhoffiella purpurea GCF 000585215 1
      • AAI clade 4-27-11 medoid: Immundisolibacter cernigliae GCF 001697225 1
      • AAI clade 4-27-12 medoid: Lamprocystis purpurea DSM 4197 GCF 000379525 1
      • AAI clade 4-27-13 medoid: Methylophaga nitratireducenticrescens GCF 000260985 4
      • AAI clade 4-27-14 medoid: Plasticicumulans acidivorans GCF 003182095 1
      • AAI clade 4-27-15 medoid: Sedimenticola selenatireducens DSM 17993 GCF 000428045 1
      • AAI clade 4-27-16 medoid: Thiocapsa roseopersicina GCF 900106925 1
      • AAI clade 4-27-17 medoid: Thiocapsa imhoffii GCF 016583985 1
      • AAI clade 4-27-18 medoid: Thiocystis minor GCF 016653465 1
      • AAI clade 4-27-19 medoid: Thioflavicoccus mobilis 8321 GCF 000327045 1
      • AAI clade 4-27-20 medoid: Thiohalocapsa halophila GCF 016583825 1
      • AAI clade 4-27-21 medoid: Thiohalocapsa marina GCF 008632335 1
        1 dataset: Thiohalocapsa marina GCF 008632335 1 (AAI: 100.0%)
      • AAI clade 4-27-22 medoid: Thiolapillus brandeum GCF 000828615 1
      • AAI clade 4-27-23 medoid: Thiorhodococcus minor GCF 010820565 1
    • AAI clade 4-28 medoid: Marinomonas lutimaris GCF 019426345 1
    • AAI clade 4-29 medoid: Thiothrix lacustris DSM 21227 GCF 000621325 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1