AAI clade 4-9 | MiGA Online

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AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
- AAI clade 4-1 medoid: Acinetobacter courvalinii GCF 008802255 1
- AAI clade 4-2 medoid: Pseudomonas congelans GCF 900103225 1
- AAI clade 4-3 medoid: Pseudomonas monsensis GCF 014268495 2
- AAI clade 4-4 medoid: Pseudomonas nitroreducens GCF 012986245 1
- AAI clade 4-5 medoid: Pseudomonas azotoformans GCF 900624915 1
- AAI clade 4-6 medoid: Pseudomonas chengduensis GCF 900102635 1
- AAI clade 4-7 medoid: Acinetobacter bouvetii DSM 14964 CIP 107468 GCF 000373725 1
- AAI clade 4-8 medoid: Moraxella equi GCF 002027555 1
- AAI clade 4-9 medoid: Halomonas ventosae GCF 004363555 1
  - AAI clade 4-9-1 medoid: Halomonas elongata DSM 2581 GCF 000196875 2
  - AAI clade 4-9-2 medoid: Cobetia marina GCF 001720485 1
  - AAI clade 4-9-3 medoid: Halomonas getboli GCF 023094245 1
  - AAI clade 4-9-4 medoid: Halomonas heilongjiangensis GCF 003202165 1
  - AAI clade 4-9-5 medoid: Aidingimonas halophila GCF 014651655 1
  - AAI clade 4-9-6 medoid: Halomonas anticariensis FP35 DSM 16096 GCF 000409775 1
  - AAI clade 4-9-7 medoid: Halomonas sulfidoxydans GCF 017868775 1
  - AAI clade 4-9-8 medoid: Halomonas cupida GCF 007991155 1
  - AAI clade 4-9-9 medoid: Halomonas alimentaria GCF 009902005 1
  - AAI clade 4-9-10 medoid: Halomonas aerodenitrificans GCF 021404405 1
  - AAI clade 4-9-11 medoid: Halomonas lutea DSM 23508 GCF 000378505 1
  - AAI clade 4-9-12 medoid: Marinospirillum insulare DSM 21763 GCF 000686905 1
  - AAI clade 4-9-13 medoid: Oceanospirillum sediminis GCF 014164585 1
  - AAI clade 4-9-14 medoid: Allopseudospirillum japonicum GCF 900108915 1
  - AAI clade 4-9-15 medoid: Chromohalobacter nigrandesensis GCF 023061285 1
  - AAI clade 4-9-16 medoid: Halomonas denitrificans GCF 003056305 1
  - AAI clade 4-9-17 medoid: Halomonas mongoliensis GCF 031451685 1
  - AAI clade 4-9-18 medoid: Halomonas alkalisoli GCF 021412585 1
  - AAI clade 4-9-19 medoid: Halomonas maura GCF 030409305 1
  - AAI clade 4-9-20 medoid: Halomonas ventosae GCF 004363555 1
  - AAI clade 4-9-21 medoid: Halomonas faecis GCF 010993975 1
  - AAI clade 4-9-22 medoid: Halomonas korlensis GCF 900116705 1
  - AAI clade 4-9-23 medoid: Halomonas salinarum GCF 012062845 1
  - AAI clade 4-9-24 medoid: Halomonas qiaohouensis GCF 031451695 1
  - AAI clade 4-9-25 medoid: Modicisalibacter coralii GCF 004117855 1
  - AAI clade 4-9-26 medoid: Marinospirillum alkaliphilum DSM 21637 GCF 900119735 1
  - AAI clade 4-9-27 medoid: Marinospirillum perlucidum GCF 003336805 1
  - AAI clade 4-9-28 medoid: Terasakiispira papahanaumokuakeensis GCF 001709345 1
- AAI clade 4-10 medoid: Pseudomonas songnenensis GCF 003696315 1
- AAI clade 4-11 medoid: Pseudomonas plecoglossicida GCF 030160515 1
- AAI clade 4-12 medoid: Psychrobacter aquimaris GCF 016107525 1
- AAI clade 4-13 medoid: Alloalcanivorax xenomutans GCF 900217905 1
- AAI clade 4-14 medoid: Marinobacterium sediminicola GCF 900184155 1
- AAI clade 4-15 medoid: Salinicola lusitanus GCF 003206045 1
- AAI clade 4-16 medoid: Seongchinamella unica GCF 004354085 1
- AAI clade 4-17 medoid: Halomonas alkaliphila GCF 033842765 1
- AAI clade 4-18 medoid: Marinobacter flavimaris GCF 003363485 1
- AAI clade 4-19 medoid: Microbulbifer marinus GCF 900107725 1
- AAI clade 4-20 medoid: Acidithiobacillus ferrooxidans ATCC 23270 GCF 000021485 1
- AAI clade 4-21 medoid: Ectothiorhodospira shaposhnikovii GCF 022227765 1
- AAI clade 4-22 medoid: Thalassolituus alkanivorans GCF 020447205 1
- AAI clade 4-23 medoid: Electrothrix rattekaaiensis asm GCA 032595675 1
- AAI clade 4-24 medoid: Halopseudomonas gallaeciensis GCF 003444685 1
- AAI clade 4-25 medoid: Maridesulfovibrio salexigens DSM 2638 GCF 000023445 1
- AAI clade 4-26 medoid: Endozoicomonas gorgoniicola GCF 025562715 2
- AAI clade 4-27 medoid: Allochromatium humboldtianum GCF 013385175 1
- AAI clade 4-28 medoid: Marinomonas lutimaris GCF 019426345 1
- AAI clade 4-29 medoid: Thiothrix lacustris DSM 21227 GCF 000621325 1
AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
AAI clade 17 medoid: Dorea hominis GCF 014287705 1
AAI clade 18 medoid: Massilia putida GCF 001941825 1
AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1

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