AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
    • AAI clade 11-1 medoid: Streptomyces tanashiensis GCF 014648895 1
    • AAI clade 11-2 medoid: Kribbella sindirgiensis GCF 004331435 1
    • AAI clade 11-3 medoid: Corynebacterium lehmanniae GCF 027570055 1
    • AAI clade 11-4 medoid: Streptomyces sabulosicollis GCF 016103465 1
    • AAI clade 11-5 medoid: Streptomyces tricolor GCF 002155905 1
      • AAI clade 11-5-1 medoid: Streptomyces tricolor GCF 002155905 1
      • AAI clade 11-5-2 medoid: Streptomyces malaysiense GCF 000980885 2
      • AAI clade 11-5-3 medoid: Streptomyces collinus GCF 031348265 1
      • AAI clade 11-5-4 medoid: Streptomyces hyderabadensis GCF 020404845 1
      • AAI clade 11-5-5 medoid: Streptomyces mirabilis GCF 014650275 1
      • AAI clade 11-5-6 medoid: Streptomyces viridiviolaceus GCF 014650995 1
      • AAI clade 11-5-7 medoid: Streptomyces neyagawaensis GCF 023516595 1
      • AAI clade 11-5-8 medoid: Streptomyces prasinus GCF 008704445 1
      • AAI clade 11-5-9 medoid: Streptomyces albidoflavus GCF 004195735 1
      • AAI clade 11-5-10 medoid: Streptomyces afghaniensis 772 GCF 000415505 1
      • AAI clade 11-5-11 medoid: Streptomyces caniscabiei GCF 014930365 1
      • AAI clade 11-5-12 medoid: Streptomyces calvus GCF 014138735 1
      • AAI clade 11-5-13 medoid: Streptomyces liliifuscus GCF 016598615 1
      • AAI clade 11-5-14 medoid: Streptomyces flavofungini GCF 014650815 1
      • AAI clade 11-5-15 medoid: Gordonibacter urolithinfaciens GCF 003788975 1
      • AAI clade 11-5-16 medoid: Streptomyces galilaeus GCF 008704575 1
      • AAI clade 11-5-17 medoid: Streptomyces ureilyticus GCF 011045025 1
      • AAI clade 11-5-18 medoid: Streptomyces pseudovenezuelae GCF 001513955 1
      • AAI clade 11-5-19 medoid: Streptomyces thermodiastaticus GCF 030815045 1
      • AAI clade 11-5-20 medoid: Streptomyces alboniger GCF 001418385 1
      • AAI clade 11-5-21 medoid: Streptomyces rishiriensis GCF 003112535 1
      • AAI clade 11-5-22 medoid: Streptomyces liliiviolaceus GCF 018070025 1
      • AAI clade 11-5-23 medoid: Streptomyces muensis GCF 021474425 1
        • AAI clade 11-5-23-1 medoid: Streptomyces muensis GCF 021474425 1
        • AAI clade 11-5-23-2 medoid: Kutzneria buriramensis GCF 030551255 1
        • AAI clade 11-5-23-3 medoid: Streptomyces luteolifulvus GCF 008806595 1
      • AAI clade 11-5-24 medoid: Streptomyces chilikensis GCF 001642695 1
      • AAI clade 11-5-25 medoid: Streptomyces galbus GCF 005280195 1
      • AAI clade 11-5-26 medoid: Streptomyces himalayensis subsp. aureolus GCF 013912435 1
      • AAI clade 11-5-27 medoid: Streptomyces harenosi GCF 011008945 1
      • AAI clade 11-5-28 medoid: Streptomyces plumbidurans GCF 019857225 1
      • AAI clade 11-5-29 medoid: Streptomyces bluensis GCF 014650715 1
      • AAI clade 11-5-30 medoid: Streptomyces hyaluromycini GCF 002217755 1
      • AAI clade 11-5-31 medoid: Eggerthella timonensis GCF 900184265 1
      • AAI clade 11-5-32 medoid: Raoultibacter timonensis GCF 900240215 1
      • AAI clade 11-5-33 medoid: Streptomyces acidiscabies GCF 033795045 1
      • AAI clade 11-5-34 medoid: Streptomyces panaciradicis GCF 023516615 1
      • AAI clade 11-5-35 medoid: Streptomyces anandii JCM 4720 GCF 014650655 1
      • AAI clade 11-5-36 medoid: Streptomyces xanthii GCF 014621695 1
      • AAI clade 11-5-37 medoid: Streptomyces cinnabarinus GCF 027270315 1
      • AAI clade 11-5-38 medoid: Streptomyces polyasparticus GCF 014493765 1
      • AAI clade 11-5-39 medoid: Streptomyces durmitorensis GCF 023498005 1
      • AAI clade 11-5-40 medoid: Streptomyces lacrimifluminis GCF 014646095 1
      • AAI clade 11-5-41 medoid: Streptomyces hokutonensis GCF 000376565 1
      • AAI clade 11-5-42 medoid: Streptomyces montanisoli GCF 017813245 1
    • AAI clade 11-6 medoid: Nocardiopsis dassonvillei GCF 900638215 1
    • AAI clade 11-7 medoid: Nonomuraea jabiensis GCF 014204795 1
    • AAI clade 11-8 medoid: Nocardioides pinisoli GCF 024199985 1
    • AAI clade 11-9 medoid: Actinomadura citrea GCF 013409045 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1