AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
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AAI clade 11-2
medoid: Kribbella sindirgiensis GCF 004331435 1
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AAI clade 11-3
medoid: Corynebacterium lehmanniae GCF 027570055 1
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AAI clade 11-4
medoid: Streptomyces sabulosicollis GCF 016103465 1
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AAI clade 11-5
medoid: Streptomyces tricolor GCF 002155905 1
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AAI clade 11-5-1
medoid: Streptomyces tricolor GCF 002155905 1
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AAI clade 11-5-2
medoid: Streptomyces malaysiense GCF 000980885 2
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AAI clade 11-5-3
medoid: Streptomyces collinus GCF 031348265 1
- AAI clade 11-5-4 medoid: Streptomyces hyderabadensis GCF 020404845 1
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AAI clade 11-5-5
medoid: Streptomyces mirabilis GCF 014650275 1
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AAI clade 11-5-6
medoid: Streptomyces viridiviolaceus GCF 014650995 1
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AAI clade 11-5-7
medoid: Streptomyces neyagawaensis GCF 023516595 1
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AAI clade 11-5-8
medoid: Streptomyces prasinus GCF 008704445 1
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AAI clade 11-5-9
medoid: Streptomyces albidoflavus GCF 004195735 1
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AAI clade 11-5-10
medoid: Streptomyces afghaniensis 772 GCF 000415505 1
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AAI clade 11-5-11
medoid: Streptomyces caniscabiei GCF 014930365 1
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AAI clade 11-5-12
medoid: Streptomyces calvus GCF 014138735 1
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AAI clade 11-5-13
medoid: Streptomyces liliifuscus GCF 016598615 1
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AAI clade 11-5-14
medoid: Streptomyces flavofungini GCF 014650815 1
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AAI clade 11-5-15
medoid: Gordonibacter urolithinfaciens GCF 003788975 1
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AAI clade 11-5-16
medoid: Streptomyces galilaeus GCF 008704575 1
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AAI clade 11-5-17
medoid: Streptomyces ureilyticus GCF 011045025 1
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AAI clade 11-5-18
medoid: Streptomyces pseudovenezuelae GCF 001513955 1
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AAI clade 11-5-19
medoid: Streptomyces thermodiastaticus GCF 030815045 1
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AAI clade 11-5-20
medoid: Streptomyces alboniger GCF 001418385 1
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AAI clade 11-5-21
medoid: Streptomyces rishiriensis GCF 003112535 1
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AAI clade 11-5-22
medoid: Streptomyces liliiviolaceus GCF 018070025 1
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AAI clade 11-5-23
medoid: Streptomyces muensis GCF 021474425 1
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AAI clade 11-5-24
medoid: Streptomyces chilikensis GCF 001642695 1
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AAI clade 11-5-25
medoid: Streptomyces galbus GCF 005280195 1
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AAI clade 11-5-26
medoid: Streptomyces himalayensis subsp. aureolus GCF 013912435 1
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AAI clade 11-5-27
medoid: Streptomyces harenosi GCF 011008945 1
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AAI clade 11-5-28
medoid: Streptomyces plumbidurans GCF 019857225 1
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AAI clade 11-5-29
medoid: Streptomyces bluensis GCF 014650715 1
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AAI clade 11-5-30
medoid: Streptomyces hyaluromycini GCF 002217755 1
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AAI clade 11-5-31
medoid: Eggerthella timonensis GCF 900184265 1
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AAI clade 11-5-32
medoid: Raoultibacter timonensis GCF 900240215 1
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AAI clade 11-5-33
medoid: Streptomyces acidiscabies GCF 033795045 1
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AAI clade 11-5-34
medoid: Streptomyces panaciradicis GCF 023516615 1
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AAI clade 11-5-35
medoid: Streptomyces anandii JCM 4720 GCF 014650655 1
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AAI clade 11-5-36
medoid: Streptomyces xanthii GCF 014621695 1
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AAI clade 11-5-37
medoid: Streptomyces cinnabarinus GCF 027270315 1
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AAI clade 11-5-38
medoid: Streptomyces polyasparticus GCF 014493765 1
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AAI clade 11-5-39
medoid: Streptomyces durmitorensis GCF 023498005 1
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AAI clade 11-5-40
medoid: Streptomyces lacrimifluminis GCF 014646095 1
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AAI clade 11-5-41
medoid: Streptomyces hokutonensis GCF 000376565 1
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AAI clade 11-5-42
medoid: Streptomyces montanisoli GCF 017813245 1
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AAI clade 11-5-1
medoid: Streptomyces tricolor GCF 002155905 1
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AAI clade 11-6
medoid: Nocardiopsis dassonvillei GCF 900638215 1
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AAI clade 11-7
medoid: Nonomuraea jabiensis GCF 014204795 1
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AAI clade 11-8
medoid: Nocardioides pinisoli GCF 024199985 1
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AAI clade 11-9
medoid: Actinomadura citrea GCF 013409045 1
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AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1