AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
    • AAI clade 11-1 medoid: Streptomyces tanashiensis GCF 014648895 1
    • AAI clade 11-2 medoid: Kribbella sindirgiensis GCF 004331435 1
    • AAI clade 11-3 medoid: Corynebacterium lehmanniae GCF 027570055 1
      • AAI clade 11-3-1 medoid: Corynebacterium ramonii FRC0011 GCF 949127625 1
      • AAI clade 11-3-2 medoid: Corynebacterium lehmanniae GCF 027570055 1
      • AAI clade 11-3-3 medoid: Corynebacterium jeikeium GCF 001999385 1
      • AAI clade 11-3-4 medoid: Corynebacterium lizhenjunii GCF 011038655 2
      • AAI clade 11-3-5 medoid: Speluncibacter jeojiensis GCF 029589495 1
      • AAI clade 11-3-6 medoid: Corynebacterium pilosum DSM 20521 GCF 000373805 1
      • AAI clade 11-3-7 medoid: Corynebacterium meitnerae GCF 027570075 1
      • AAI clade 11-3-8 medoid: Corynebacterium timonense 5401744 GCF 000312345 1
      • AAI clade 11-3-9 medoid: Corynebacterium lowii GCF 001412085 1
      • AAI clade 11-3-10 medoid: Corynebacterium tapiri GCF 006334925 1
      • AAI clade 11-3-11 medoid: Corynebacterium suedekumii GCF 030252185 1
      • AAI clade 11-3-12 medoid: Corynebacterium pseudopelargi GCF 003814005 1
      • AAI clade 11-3-13 medoid: Corynebacterium propinquum DSM 44285 GCF 000375525 1
      • AAI clade 11-3-14 medoid: Nocardia elegans NBRC 108235 GCF 001612845 1
      • AAI clade 11-3-15 medoid: Corynebacterium urogenitale GCF 009026825 1
      • AAI clade 11-3-16 medoid: Corynebacterium aquilae DSM 44791 GCF 001941445 1
      • AAI clade 11-3-17 medoid: Corynebacterium frankenforstense DSM 45800 GCF 001941485 1
      • AAI clade 11-3-18 medoid: Corynebacterium sanguinis GCF 007641235 1
      • AAI clade 11-3-19 medoid: Corynebacterium ulceribovis DSM 45146 GCF 000372445 1
    • AAI clade 11-4 medoid: Streptomyces sabulosicollis GCF 016103465 1
    • AAI clade 11-5 medoid: Streptomyces tricolor GCF 002155905 1
    • AAI clade 11-6 medoid: Nocardiopsis dassonvillei GCF 900638215 1
    • AAI clade 11-7 medoid: Nonomuraea jabiensis GCF 014204795 1
    • AAI clade 11-8 medoid: Nocardioides pinisoli GCF 024199985 1
    • AAI clade 11-9 medoid: Actinomadura citrea GCF 013409045 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1