AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 4-1
medoid: Acinetobacter courvalinii GCF 008802255 1
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AAI clade 4-2
medoid: Pseudomonas congelans GCF 900103225 1
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AAI clade 4-3
medoid: Pseudomonas monsensis GCF 014268495 2
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AAI clade 4-4
medoid: Pseudomonas nitroreducens GCF 012986245 1
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AAI clade 4-5
medoid: Pseudomonas azotoformans GCF 900624915 1
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AAI clade 4-6
medoid: Pseudomonas chengduensis GCF 900102635 1
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AAI clade 4-7
medoid: Acinetobacter bouvetii DSM 14964 CIP 107468 GCF 000373725 1
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AAI clade 4-8
medoid: Moraxella equi GCF 002027555 1
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AAI clade 4-9
medoid: Halomonas ventosae GCF 004363555 1
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AAI clade 4-10
medoid: Pseudomonas songnenensis GCF 003696315 1
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AAI clade 4-11
medoid: Pseudomonas plecoglossicida GCF 030160515 1
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AAI clade 4-12
medoid: Psychrobacter aquimaris GCF 016107525 1
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AAI clade 4-13
medoid: Alloalcanivorax xenomutans GCF 900217905 1
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AAI clade 4-14
medoid: Marinobacterium sediminicola GCF 900184155 1
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AAI clade 4-15
medoid: Salinicola lusitanus GCF 003206045 1
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AAI clade 4-16
medoid: Seongchinamella unica GCF 004354085 1
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AAI clade 4-17
medoid: Halomonas alkaliphila GCF 033842765 1
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AAI clade 4-17-1
medoid: Halomonas alkaliphila GCF 033842765 1
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AAI clade 4-17-2
medoid: Halomonas piezotolerans GCF 009660035 1
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AAI clade 4-17-3
medoid: Halomonas johnsoniae GCF 014651795 1
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AAI clade 4-17-4
medoid: Halomonas sedimenti GCF 013416325 1
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AAI clade 4-17-5
medoid: Cobetia amphilecti GCF 030010415 1
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AAI clade 4-17-6
medoid: Halomonas hibernica GCF 013183775 1
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AAI clade 4-17-7
medoid: Halomonas casei GCF 014897975 1
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AAI clade 4-17-8
medoid: Oceanospirillum linum GCF 001995095 2
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AAI clade 4-17-9
medoid: Halomonas arcis GCF 900103865 1
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AAI clade 4-17-10
medoid: Halomonas azerica GCF 013112225 1
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AAI clade 4-17-11
medoid: Halomonas dongshanensis GCF 024790395 1
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AAI clade 4-17-12
medoid: Halomonas garicola GCF 031935715 1
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AAI clade 4-17-13
medoid: Halomonas gomseomensis GCF 031451645 1
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AAI clade 4-17-14
medoid: Halomonas janggokensis GCF 031451615 1
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AAI clade 4-17-15
medoid: Halomonas jeotgali Hwa GCF 000334215 1
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AAI clade 4-17-16
medoid: Halomonas lionensis GCF 002087295 1
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AAI clade 4-17-17
medoid: Halomonas llamarensis GCF 023555005 1
1 dataset: Halomonas llamarensis GCF 023555005 1 (AAI: 100.0%)
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AAI clade 4-17-18
medoid: Halomonas lutescens GCF 014640815 1
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AAI clade 4-17-19
medoid: Halomonas massiliensis GCF 900155385 1
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AAI clade 4-17-20
medoid: Halomonas nanhaiensis GCF 003990185 1
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AAI clade 4-17-21
medoid: Halomonas nigrificans GCF 002374315 1
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AAI clade 4-17-22
medoid: Halomonas piscis GCF 031886125 1
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AAI clade 4-17-23
medoid: Halomonas zhuhanensis GCF 009793355 1
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AAI clade 4-17-24
medoid: Halomonas salicampi GCF 013415105 1
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AAI clade 4-17-25
medoid: Halomonas songnenensis GCF 003002925 1
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AAI clade 4-17-26
medoid: Halomonas subglaciescola GCF 900142895 1
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AAI clade 4-17-27
medoid: Halomonas vilamensis GCF 031451755 1
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AAI clade 4-17-28
medoid: Halomonas colorata GCF 014897985 1
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AAI clade 4-17-29
medoid: Halomonas zhaodongensis GCF 013415115 1
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AAI clade 4-17-30
medoid: Halovibrio variabilis GCF 007991175 1
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AAI clade 4-17-31
medoid: Oceanospirillum sanctuarii GCF 002150805 1
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AAI clade 4-17-1
medoid: Halomonas alkaliphila GCF 033842765 1
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AAI clade 4-18
medoid: Marinobacter flavimaris GCF 003363485 1
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AAI clade 4-19
medoid: Microbulbifer marinus GCF 900107725 1
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AAI clade 4-20
medoid: Acidithiobacillus ferrooxidans ATCC 23270 GCF 000021485 1
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AAI clade 4-21
medoid: Ectothiorhodospira shaposhnikovii GCF 022227765 1
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AAI clade 4-22
medoid: Thalassolituus alkanivorans GCF 020447205 1
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AAI clade 4-23
medoid: Electrothrix rattekaaiensis asm GCA 032595675 1
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AAI clade 4-24
medoid: Halopseudomonas gallaeciensis GCF 003444685 1
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AAI clade 4-25
medoid: Maridesulfovibrio salexigens DSM 2638 GCF 000023445 1
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AAI clade 4-26
medoid: Endozoicomonas gorgoniicola GCF 025562715 2
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AAI clade 4-27
medoid: Allochromatium humboldtianum GCF 013385175 1
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AAI clade 4-28
medoid: Marinomonas lutimaris GCF 019426345 1
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AAI clade 4-29
medoid: Thiothrix lacustris DSM 21227 GCF 000621325 1
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AAI clade 4-1
medoid: Acinetobacter courvalinii GCF 008802255 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1